Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_K02
         (312 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   102   1e-23
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    99   2e-22
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    29   0.21 
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    27   0.65 
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    27   0.65 
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    25   2.0  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    25   2.0  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    25   2.6  
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1...    25   3.5  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    24   6.1  
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces...    23   8.1  
SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dl...    23   8.1  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  102 bits (245), Expect = 1e-23
 Identities = 48/67 (71%), Positives = 54/67 (80%)
 Frame = +3

Query: 9   VNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLSRDQRWDVVV 188
           VNIPVIALC+TDS L  VDIAIP N K   SIGL+W+LLAREVLR+RG LSR   WDV+ 
Sbjct: 142 VNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMP 201

Query: 189 DLFFYRD 209
           DL+FYRD
Sbjct: 202 DLYFYRD 208


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 98.7 bits (235), Expect = 2e-22
 Identities = 46/67 (68%), Positives = 53/67 (79%)
 Frame = +3

Query: 9   VNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLSRDQRWDVVV 188
           VNIPVIALC+TDS L  VD+AIP N K   SIGL W+LLAREVLRLRG +SR   W+V+ 
Sbjct: 143 VNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMP 202

Query: 189 DLFFYRD 209
           DL+FYRD
Sbjct: 203 DLYFYRD 209


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 28.7 bits (61), Expect = 0.21
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 6   RVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 131
           + ++P I + +TD+  R V   IP N  S     L+  LL+R
Sbjct: 200 KTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 27.1 bits (57), Expect = 0.65
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 102 IGLMWWLLAREVLRLRGVLSRDQRWD 179
           IGL W L  REV R + + +R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 27.1 bits (57), Expect = 0.65
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 24  IALCNTDSPLRFVDIAIPCNTKSSHSI 104
           + LC+ +S  RF D+A+  NTK +H I
Sbjct: 85  LQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 111 MWWLLAREVLRLRGVLSRDQRW 176
           +WW L+R+  R    LSR  +W
Sbjct: 68  IWWSLSRKATRFYRWLSRSLKW 89


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = +3

Query: 30  LCNTDSPLRFVD--IAIPCNTKSSHSI-GLMWWLLAREVLRLRGVLSRDQRWDV 182
           L   D  ++  D  +A   N    HS+ G  +W+ A EV+ L G  +    W V
Sbjct: 138 LTTKDGTIKLADFGVATKINALEDHSVVGSPYWM-APEVIELVGATTASDIWSV 190


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 234 ALPSHSLQGHDRRTSQRQHPNAGH 163
           A+ SHS + H +RT+Q+      H
Sbjct: 546 AISSHSSESHSKRTTQQPKSTPNH 569


>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 386

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -3

Query: 175 QRWSR-LRTPRSLNTSRANNHHIRPMECEDLVLHGIAMSTNLR 50
           + W++  ++ R L+T +   + IRP   E L+L G+A    L+
Sbjct: 177 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELK 219


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 151 VFLVVTSVGMLSLTCSSIVTLKRVRRKSNKLRNRLSSLPKW 273
           +++VV   G+L+   SS      VRR++ +LR+ +     W
Sbjct: 565 MYIVVFREGLLTFHFSSATHPASVRRRARQLRDYVHVSSDW 605


>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 287

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 196 SSIVTLKRVRRKSNKLRNRLSSLPKWK 276
           + I+  K+ +    ++RN LSSL  W+
Sbjct: 180 AGIIAHKQTQETHERIRNWLSSLNSWQ 206


>SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dlp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 135 VLRLRGVLSRDQRW 176
           +L+  GVLSRD RW
Sbjct: 31  LLKAVGVLSRDSRW 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,066,153
Number of Sequences: 5004
Number of extensions: 17100
Number of successful extensions: 64
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)