Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_K02
(312 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 97 2e-21
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 97 2e-21
02_05_0938 + 32901143-32901215,32901841-32901982,32902243-329023... 28 1.8
08_01_0950 - 9428506-9428693,9429223-9429595,9430127-9430572,943... 27 4.1
02_03_0074 + 14781763-14784191,14784888-14784978,14785180-147852... 27 4.1
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789... 27 4.1
12_01_0829 + 7674416-7674471,7675043-7675129,7675210-7675250,767... 26 5.4
12_01_0117 + 893924-893971,894944-895003,895024-895174,895410-89... 26 5.4
02_02_0034 - 6246183-6246553,6246672-6249699 26 5.4
06_03_1140 - 27942927-27942986,27943134-27943328 26 7.2
06_03_0999 - 26752410-26752523,26752601-26752830,26752914-267531... 26 7.2
02_05_0438 + 28997551-28997664,28997769-28997977,28998087-28998372 26 7.2
02_05_0325 - 27951570-27952808 26 7.2
07_03_0670 + 20562188-20562923,20564288-20564826,20564967-205654... 25 9.5
07_01_0480 + 3616123-3617506,3618033-3618166,3618578-3618818,361... 25 9.5
06_03_0543 + 21967787-21970261 25 9.5
04_04_0907 + 29304830-29305030,29305296-29305547 25 9.5
03_03_0201 - 15400953-15401080,15401787-15401882,15402252-154024... 25 9.5
02_02_0032 - 6227556-6227926,6228322-6231085 25 9.5
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 97.5 bits (232), Expect = 2e-21
Identities = 41/66 (62%), Positives = 51/66 (77%)
Frame = +3
Query: 12 NIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLSRDQRWDVVVD 191
NIP IA C+TDSP+R+VDI IP N K SIG ++WLLAR VL++RG + +WDV+VD
Sbjct: 145 NIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVD 204
Query: 192 LFFYRD 209
LFFYRD
Sbjct: 205 LFFYRD 210
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 97.5 bits (232), Expect = 2e-21
Identities = 41/66 (62%), Positives = 52/66 (78%)
Frame = +3
Query: 12 NIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLSRDQRWDVVVD 191
NIP IA C+TDSP+R+VDI IP N K +SIG ++WLLAR VL++RG + +WDV+VD
Sbjct: 145 NIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVD 204
Query: 192 LFFYRD 209
LFFYRD
Sbjct: 205 LFFYRD 210
>02_05_0938 +
32901143-32901215,32901841-32901982,32902243-32902314,
32902573-32902644,32902711-32902782,32902913-32902948,
32903001-32903072,32903319-32903387,32903483-32903554,
32903668-32903739,32903838-32903909,32904153-32904224,
32904470-32904541,32904623-32904694,32904782-32904853,
32904911-32905003,32905150-32905218,32905315-32905386,
32905479-32905552,32905643-32905771,32905966-32906331,
32906584-32906954,32907522-32907890
Length = 884
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 172 VGMLSLTCSSIVTLKRVRRKSNKLRNRLSSLPKWKRRRQFMR 297
VGM+ T S + LK + NKL + L W Q++R
Sbjct: 104 VGMIPSTLSQLPNLKILDLAQNKLNGEIPRLIYWNEVLQYLR 145
>08_01_0950 -
9428506-9428693,9429223-9429595,9430127-9430572,
9430654-9430785,9431129-9431236,9431428-9431533
Length = 450
Score = 26.6 bits (56), Expect = 4.1
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +3
Query: 72 IPCNTKSSHSIGLMWW 119
+P + SS+S+GL WW
Sbjct: 19 VPGDVSSSYSLGLFWW 34
>02_03_0074 +
14781763-14784191,14784888-14784978,14785180-14785230,
14785882-14785947,14786509-14786610
Length = 912
Score = 26.6 bits (56), Expect = 4.1
Identities = 17/58 (29%), Positives = 21/58 (36%)
Frame = -1
Query: 312 HSQSIPHELSAALPLWERRQPVP*LVALPSHSLQGHDRRTSQRQHPNAGHD*EHHGVS 139
H Q P ALP P ++ + S H SQ Q P + H HH S
Sbjct: 121 HQQQTPQAALQALPPPNSTASSPIPISSIAPSSPRHPHHHSQPQQPQSHHHHHHHSGS 178
>01_07_0027 -
40578075-40578437,40578647-40578767,40578852-40578952,
40579176-40579451,40579485-40579805,40581609-40581623,
40581969-40582295,40583287-40583538
Length = 591
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 209 VTIEEQVNDNIPTLVTTKNTTESQYFTC*QPPH 111
V + Q NIP LVT+ +TT+ + F PPH
Sbjct: 462 VNNKPQAKPNIPRLVTSTSTTKLERF---PPPH 491
>12_01_0829 +
7674416-7674471,7675043-7675129,7675210-7675250,
7675433-7675755
Length = 168
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -1
Query: 237 VALPSHSLQGHDRRTSQRQHPNAGHD*EHHGVSI 136
+A P G +RT++ GH EHHGV +
Sbjct: 90 LAWPPRWAPGVSKRTARVPQRPVGHATEHHGVGV 123
>12_01_0117 +
893924-893971,894944-895003,895024-895174,895410-895884,
895974-896316,896347-896391,896533-896631,896708-896828,
897032-897255
Length = 521
Score = 26.2 bits (55), Expect = 5.4
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +1
Query: 115 GGC*HVKY*DSVVFLVVTSVGMLSLTCSSIVTLKRVRRKSNKLRNRLSSL 264
GG Y SVV ++ +SVG++ L SS+ TL V K + ++ L
Sbjct: 336 GGVVRSLYYKSVVAVLRSSVGVMLLIASSMDTLVNVSTKVRLIMDKFGIL 385
>02_02_0034 - 6246183-6246553,6246672-6249699
Length = 1132
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 148 VVFLVVTSVGMLSLTCSSIVTLKRVRRKSNK 240
+V +V S ++SL C +IV +KR + + N+
Sbjct: 771 IVIPIVVSAVVISLLCLTIVLMKRRKEEPNQ 801
>06_03_1140 - 27942927-27942986,27943134-27943328
Length = 84
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +3
Query: 57 FVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLSRDQRWDVV 185
FV + + + + H IG W L ++L + + + + WDVV
Sbjct: 20 FVCLTVGVTSSALHGIGRHWDTLRCKILGILKCIVKYKFWDVV 62
>06_03_0999 -
26752410-26752523,26752601-26752830,26752914-26753169,
26753763-26753828,26753921-26754046,26754148-26754288,
26754377-26754387,26754523-26754670,26755326-26755454,
26755573-26755710,26755808-26755876,26755955-26756023,
26756565-26756720,26756885-26756985,26757068-26757215,
26757540-26757702,26757833-26757965,26758049-26758226,
26758330-26758572,26758664-26758732,26759063-26759187,
26759727-26759766,26760756-26760812,26762831-26762935
Length = 1004
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 90 SSHSIGLMWWLLAREVLRLRGV 155
S+ IGL+WWLL + L G+
Sbjct: 57 SADFIGLIWWLLCLSLTTLSGL 78
>02_05_0438 + 28997551-28997664,28997769-28997977,28998087-28998372
Length = 202
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +1
Query: 160 VVTSVGMLSLTCSSIVTLKRVRRKSNKLRNRLSSLPK 270
+V + + +CS ++V+ K KL L SLPK
Sbjct: 17 IVVLLCATAFSCSLAAEFRKVKEKDMKLDGSLCSLPK 53
>02_05_0325 - 27951570-27952808
Length = 412
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -1
Query: 288 LSAALPLWERRQPVP*LVALPSHSLQG 208
LS P W RR P L+ LP H G
Sbjct: 359 LSLQTPAWMRRDPTLRLLELPPHHHHG 385
>07_03_0670 +
20562188-20562923,20564288-20564826,20564967-20565458,
20566803-20567018
Length = 660
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 82 LHGIAMSTNLRGESVLHKAITG 17
L + +TN RGE+ LH A+ G
Sbjct: 144 LRALTRATNRRGETPLHDAVRG 165
>07_01_0480 +
3616123-3617506,3618033-3618166,3618578-3618818,
3618912-3619120,3619234-3619265,3619363-3619474,
3619609-3619890
Length = 797
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 288 LSAALPLWERRQPVP*LVALPSHSLQG 208
LS LP W R PV +++L ++SL+G
Sbjct: 170 LSGELPAWLGRLPVLAVLSLRNNSLEG 196
>06_03_0543 + 21967787-21970261
Length = 824
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 108 LMWWLLAREVLRLRGVLSRDQRWDVVVDLF 197
L W++L RE +LRGV + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>04_04_0907 + 29304830-29305030,29305296-29305547
Length = 150
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 3 TRVNIPVIALCNTDSPLRFVDIAIPCNT 86
T NIP+I L + D P +IA C T
Sbjct: 35 TDSNIPLIDLASPDKPRVIAEIAQACRT 62
>03_03_0201 -
15400953-15401080,15401787-15401882,15402252-15402402,
15404352-15404548,15404660-15404819
Length = 243
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 223 RRKSNKLRNRLSSLPKWKRRRQFMR 297
RR+ L RL LP++ R RQ R
Sbjct: 147 RRRPRHLHQRLQGLPEFSRARQHRR 171
>02_02_0032 - 6227556-6227926,6228322-6231085
Length = 1044
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 148 VVFLVVTSVGMLSLTCSSIVTLKRVRRKSN 237
+V +V S ++SL C ++V +KR + + N
Sbjct: 771 IVIPIVVSAVVISLLCLTVVLMKRRKEEPN 800
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,204,309
Number of Sequences: 37544
Number of extensions: 119577
Number of successful extensions: 354
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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