Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_K02
         (312 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical pr...    88   1e-18
U39742-3|AAY86225.1|  188|Caenorhabditis elegans Hypothetical pr...    28   1.2  
AL033510-7|CAA22069.1|  124|Caenorhabditis elegans Hypothetical ...    28   1.6  
AF016451-6|AAB66000.2|  379|Caenorhabditis elegans Serpentine re...    26   6.4  
AC024214-19|AAF36071.1|  451|Caenorhabditis elegans Hypothetical...    25   8.4  

>Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical
           protein B0393.1 protein.
          Length = 276

 Score = 87.8 bits (208), Expect = 1e-18
 Identities = 38/72 (52%), Positives = 52/72 (72%), Gaps = 5/72 (6%)
 Frame = +3

Query: 9   VNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLSRDQRW---- 176
           V +PVI+  NT+SPL+ +DI +PCN K   SIGLMWW+LARE+L LRG +SR   +    
Sbjct: 140 VGVPVISFVNTESPLKLIDIGVPCNNKGERSIGLMWWMLAREILILRGKISRQTGFVLEG 199

Query: 177 -DVVVDLFFYRD 209
            +++ DL+FYRD
Sbjct: 200 KEIMPDLYFYRD 211


>U39742-3|AAY86225.1|  188|Caenorhabditis elegans Hypothetical
           protein C25F6.8 protein.
          Length = 188

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 33  CNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVL 140
           CNTD+  R +     CNT   + +G+ + L+AR ++
Sbjct: 49  CNTDAEFRLIQCCSSCNT---NGVGIAYDLVARSLV 81


>AL033510-7|CAA22069.1|  124|Caenorhabditis elegans Hypothetical
           protein Y40H7A.11 protein.
          Length = 124

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 84  TKSSHSIGLMWWLLA 128
           T+  H IG+MWWL A
Sbjct: 72  TRVEHKIGIMWWLCA 86


>AF016451-6|AAB66000.2|  379|Caenorhabditis elegans Serpentine
           receptor, class w protein140 protein.
          Length = 379

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -2

Query: 197 EQVNDNIPTLVTTKNTTESQYFT 129
           ++VN N  +L +TKN+TESQ  T
Sbjct: 252 KKVNKNRQSLSSTKNSTESQKTT 274


>AC024214-19|AAF36071.1|  451|Caenorhabditis elegans Hypothetical
           protein Y77E11A.1 protein.
          Length = 451

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 30  LCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 119
           L + + P+ FV  + PC   S  S  L+WW
Sbjct: 126 LVDANLPIGFV-FSYPCELLSIRSARLLWW 154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,945,030
Number of Sequences: 27780
Number of extensions: 97318
Number of successful extensions: 281
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)