Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_K01
         (364 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces...   108   2e-25
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    28   0.39 
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    27   0.90 
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    25   4.8  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    24   6.3  
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual    24   6.3  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    24   8.3  
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom...    24   8.3  

>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 118

 Score =  108 bits (260), Expect = 2e-25
 Identities = 51/68 (75%), Positives = 60/68 (88%)
 Frame = +2

Query: 161 EKPQAEISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRITTRK 340
           +K Q   S +HRIRITLTSRNVR+LEKVCSDL+N AK ++LRVKGPVR+PTK+L+ITTRK
Sbjct: 8   QKEQQIPSTVHRIRITLTSRNVRNLEKVCSDLVNRAKDKQLRVKGPVRLPTKILKITTRK 67

Query: 341 TPCGEGSK 364
           TP GEGSK
Sbjct: 68  TPNGEGSK 75


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 28.3 bits (60), Expect = 0.39
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +2

Query: 143  VSGKDIEKPQAEISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVK 292
            +S   IEKP+A  SPIH       +  +R L+ V      GA++ +  VK
Sbjct: 891  LSSSLIEKPRASSSPIHH----ANNNGLRLLKDVLKKTYRGARENRSSVK 936


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 27.1 bits (57), Expect = 0.90
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 134 AAVVSGKDIEKPQAEISPIHRIRITLTSRNVRS 232
           A V +  D+EKPQ +++   R+   L S N R+
Sbjct: 491 ANVTTSADVEKPQVKVATSSRVDYDLKSPNQRT 523


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 343 CFTCCDAENLGRHSDWTLYTEF 278
           C+ C  A+NL  HS  +L+  F
Sbjct: 469 CYLCLYAQNLNSHSSQSLFELF 490


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +3

Query: 93  KVVYLDRNIATTWQPLSCQERISRSPRLRSH 185
           K +Y D   ++   P   Q R+ ++P +R+H
Sbjct: 322 KNLYTDNKDSSLVSPTGLQSRMEQNPEVRAH 352


>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 533

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -2

Query: 357 PSPQGVLRVVMRRTLVGIRTGPFTR 283
           P PQ ++ +     L G+   PF R
Sbjct: 176 PQPQAIMHLETSSNLTGVTVNPFNR 200


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = -2

Query: 255 RSEQTFSSERTLRDVSVILIRWIGEISAWGFSISFPDTTAAAMLLRYSGRDKQLS 91
           +S +T+  +  + D+SV+    +GE   W  ++    T  A     Y+   KQL+
Sbjct: 746 KSNKTYDGDLRITDISVVKATHLGERVLWINTVQSDSTIKA---FTYNVDTKQLN 797


>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 592

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 233 LEKVCSDLINGAKKQKLRVKGP 298
           LE +C+D I   +  KL++KGP
Sbjct: 262 LESLCTDDILFEENIKLKIKGP 283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,539,797
Number of Sequences: 5004
Number of extensions: 28945
Number of successful extensions: 71
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)