Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_K01
(364 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514 99 5e-22
03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294 99 9e-22
06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923 97 4e-21
03_02_0020 - 5045900-5046211,5046233-5046290,5046604-5047242,504... 37 0.006
07_01_0344 - 2490700-2493249 29 1.5
11_06_0500 + 24362627-24362828,24363046-24363704,24364958-243653... 28 2.0
11_01_0697 - 5743089-5744902,5745091-5745751,5747918-5748910 28 2.6
01_06_1839 - 40245862-40246022,40246872-40246977,40247868-402479... 27 3.4
08_02_0947 + 22897552-22897614,22898291-22898513,22898599-228988... 27 6.0
02_05_0551 + 29907768-29907909,29907995-29909280 27 6.0
11_06_0277 + 21843658-21845220,21846533-21846718,21847037-218471... 26 7.9
10_06_0165 + 11380807-11383585,11383628-11383734,11383782-11384018 26 7.9
09_04_0327 + 16700235-16700312,16701756-16701978,16702488-167027... 26 7.9
04_04_0717 - 27525117-27525248,27525384-27525549,27525629-275258... 26 7.9
03_05_0434 + 24252994-24253449,24254791-24254877,24255450-242557... 26 7.9
>10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514
Length = 130
Score = 99 bits (238), Expect = 5e-22
Identities = 45/77 (58%), Positives = 61/77 (79%)
Frame = +2
Query: 131 AAAVVSGKDIEKPQAEISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMP 310
A + G + +A ++RIRITL+S+NV++LEKVC+DL+ GAK ++LRVKGPVR+P
Sbjct: 9 AGGAMKGGKLGMEEARELQLNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKGPVRIP 68
Query: 311 TKVLRITTRKTPCGEGS 361
TKVL ITTRK+PCGEG+
Sbjct: 69 TKVLHITTRKSPCGEGT 85
>03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294
Length = 127
Score = 99.1 bits (236), Expect = 9e-22
Identities = 49/82 (59%), Positives = 64/82 (78%), Gaps = 4/82 (4%)
Frame = +2
Query: 128 MAAAVV----SGKDIEKPQAEISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKG 295
MAAA V G + +A ++RIRITL+S+NV++LEKVC+DL+ GAK ++LRVKG
Sbjct: 1 MAAAAVYGGMKGGKLGVEEAHELQLNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKG 60
Query: 296 PVRMPTKVLRITTRKTPCGEGS 361
PVR+PTKVL ITTRK+PCGEG+
Sbjct: 61 PVRIPTKVLHITTRKSPCGEGT 82
>06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923
Length = 128
Score = 97.1 bits (231), Expect = 4e-21
Identities = 42/57 (73%), Positives = 52/57 (91%)
Frame = +2
Query: 191 HRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRITTRKTPCGEGS 361
HRIRITL+S++V++LEKVC DL+ GAK + L+VKGPVRMPTKVL ITTRK+PCGEG+
Sbjct: 27 HRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMPTKVLHITTRKSPCGEGT 83
>03_02_0020 -
5045900-5046211,5046233-5046290,5046604-5047242,
5048475-5048515,5048672-5048728,5048952-5049140
Length = 431
Score = 36.7 bits (81), Expect = 0.006
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = +2
Query: 179 ISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTK 316
++P +IRI L S V +E C +I AK + GPV +PTK
Sbjct: 329 LAPKQKIRIKLRSYWVPLIEDSCKKIIEAAKTTNAKTMGPVPLPTK 374
>07_01_0344 - 2490700-2493249
Length = 849
Score = 28.7 bits (61), Expect = 1.5
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = -2
Query: 195 RWIGEISAWGFSISFPDTTAAAMLLRYSGRDKQ---LSNQKLLSAEPEYSFVPRA 40
RWIG+ S F++S P T A A G++ N ++ +A Y F+ A
Sbjct: 46 RWIGDSSPKNFTLSLPGTVATAP--DSDGKETYGDLYKNARIFNASSSYKFIVAA 98
>11_06_0500 +
24362627-24362828,24363046-24363704,24364958-24365300,
24366227-24366645
Length = 540
Score = 28.3 bits (60), Expect = 2.0
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -2
Query: 135 AAMLLRYSGRDKQLSNQKLLSAEPEYSFVPRAEFNTPGGXH 13
A++L +YS K+ + + L P + FV R + +TP H
Sbjct: 236 ASILAQYSSVTKKDDDAEFLICRPNFGFVTRPQQHTPKKRH 276
>11_01_0697 - 5743089-5744902,5745091-5745751,5747918-5748910
Length = 1155
Score = 27.9 bits (59), Expect = 2.6
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Frame = +2
Query: 50 TKLYSGSALSNF*FESCLSRPEY-----RNNMAAAVVSGKDIEKPQAEISPIHRIRITLT 214
T++Y G ++ ES +S P + N + +V +D+ P+ EIS + +R
Sbjct: 711 TRIYLGKSMFCLLNESSVSLPHFVVQANANGSGSNLVLLQDVNPPKLEISSLENVRSINE 770
Query: 215 SRNVRSLEK 241
+ ++ LEK
Sbjct: 771 VQIIKLLEK 779
>01_06_1839 -
40245862-40246022,40246872-40246977,40247868-40247949,
40248337-40248437,40248531-40248568,40248624-40248675
Length = 179
Score = 27.5 bits (58), Expect = 3.4
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = -2
Query: 264 PLMRSEQTFSSERTLRDVSVILIRWIGEISAWGFSISFPDTTAAAMLLRYSGRD 103
P++ SE +S E+ R V G++ AWG + FP T A A R S R+
Sbjct: 25 PMLNSELHYSQEKNKRKV--------GDVPAWGKPLKFP-TGAEAETDRVSTRE 69
>08_02_0947 +
22897552-22897614,22898291-22898513,22898599-22898892,
22899346-22900598
Length = 610
Score = 26.6 bits (56), Expect = 6.0
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -2
Query: 189 IGEISAWGFSISFPDTTAAAMLLRYSGRDKQLSNQKLLSAEPEYSFVPR 43
+G S I+F + +++L Y+G+ L N ++ Y FVPR
Sbjct: 202 LGHFSKRSIQIAFMSSIYPSLVLTYAGQTAYLINNVDDFSDGFYKFVPR 250
>02_05_0551 + 29907768-29907909,29907995-29909280
Length = 475
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = +2
Query: 230 SLEKVCSDLINGAKKQKLRVKG--PVRMPTKVLRITTRKTPCGEGSK 364
++ C+D + G LRV P + VLR+T R PC K
Sbjct: 35 AVSSTCADELPGRDWDSLRVSAASPRNGTSAVLRLTHRHGPCAPAGK 81
>11_06_0277 +
21843658-21845220,21846533-21846718,21847037-21847165,
21847256-21847415,21847846-21847955,21848038-21848247,
21848473-21848730,21848810-21848885,21849217-21849350,
21849928-21850007,21850265-21850316
Length = 985
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 129 WQPLSCQERISRSPRLRSHRSIVSGS 206
W+P+ QE R+R SIV+GS
Sbjct: 294 WKPIGAQEEEEEIARIREAFSIVNGS 319
>10_06_0165 + 11380807-11383585,11383628-11383734,11383782-11384018
Length = 1040
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 337 TCCDAENLGRHSDWTLYTEFLFLGSID 257
TCC NL ++ L EF+ GS+D
Sbjct: 802 TCCSCPNLNQNDFKALVFEFMPYGSLD 828
>09_04_0327 +
16700235-16700312,16701756-16701978,16702488-16702730,
16702815-16702865,16702965-16703225,16703319-16703371,
16703446-16703815,16703906-16704750
Length = 707
Score = 26.2 bits (55), Expect = 7.9
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = -2
Query: 189 IGEISAWGFSISFPDTTAAAMLLRYSGRDKQLSNQKLLSAEPEYSFVPR 43
+G S I+F + +++L Y+G+ L N + Y FVPR
Sbjct: 294 LGHFSKKAIQIAFLSSIYPSLVLTYAGQTAYLINNVNDFGDGFYKFVPR 342
>04_04_0717 -
27525117-27525248,27525384-27525549,27525629-27525831,
27525911-27526048,27526642-27526725,27526864-27526950,
27527048-27527120,27527169-27527432,27527692-27527768,
27527886-27527957,27528049-27528209,27528238-27528484,
27528588-27528707,27528846-27528929,27529205-27529341,
27529689-27529856,27530093-27530317,27530865-27530952,
27531033-27531194,27532797-27532919
Length = 936
Score = 26.2 bits (55), Expect = 7.9
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 271 ETKTPCKGSSPNADQGSPHHN 333
++++ CK SPN+ GS H+N
Sbjct: 101 KSRSFCKSGSPNSSPGSGHNN 121
>03_05_0434 +
24252994-24253449,24254791-24254877,24255450-24255748,
24256146-24256383,24256907-24257441,24257527-24257729,
24258311-24258520
Length = 675
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -2
Query: 273 FLAPLMRSEQTFSSERTLRDVSVILIRWIGEISAWGF 163
F+ PL+R E S+E SV+ + S WGF
Sbjct: 237 FVGPLVREEWNISAENESLLSSVVFAGMLIGASGWGF 273
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,653,704
Number of Sequences: 37544
Number of extensions: 210750
Number of successful extensions: 554
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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