Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_K01
(364 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L06498-1|AAA60286.1| 119|Homo sapiens ribosomal protein S20 pro... 111 5e-25
BC087850-1|AAH87850.1| 119|Homo sapiens ribosomal protein S20 p... 111 5e-25
BC007507-1|AAH07507.1| 119|Homo sapiens ribosomal protein S20 p... 111 5e-25
AB061842-1|BAB79480.1| 119|Homo sapiens ribosomal protein S20 p... 111 5e-25
AB007156-1|BAA25820.1| 60|Homo sapiens ribosomal protein S20 p... 56 3e-08
M60052-1|AAA88071.1| 699|Homo sapiens histidine-rich calcium bi... 29 5.9
BC112355-1|AAI12356.1| 699|Homo sapiens histidine-rich calcium-... 29 5.9
BC094691-1|AAH94691.1| 699|Homo sapiens histidine rich calcium ... 29 5.9
BC069802-1|AAH69802.1| 699|Homo sapiens histidine rich calcium ... 29 5.9
BC069795-1|AAH69795.1| 699|Homo sapiens histidine rich calcium ... 29 5.9
AK129876-1|BAC85246.1| 480|Homo sapiens protein ( Homo sapiens ... 29 5.9
AF141968-1|AAF06360.1| 5373|Homo sapiens trabeculin-alpha protein. 28 7.8
>L06498-1|AAA60286.1| 119|Homo sapiens ribosomal protein S20
protein.
Length = 119
Score = 111 bits (268), Expect = 5e-25
Identities = 55/72 (76%), Positives = 60/72 (83%), Gaps = 1/72 (1%)
Frame = +2
Query: 152 KDIEKPQAEIS-PIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRI 328
KD K E IHRIRITLTSRNV+SLEKVC+DLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4 KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63
Query: 329 TTRKTPCGEGSK 364
TTRKTPCGEGSK
Sbjct: 64 TTRKTPCGEGSK 75
>BC087850-1|AAH87850.1| 119|Homo sapiens ribosomal protein S20
protein.
Length = 119
Score = 111 bits (268), Expect = 5e-25
Identities = 55/72 (76%), Positives = 60/72 (83%), Gaps = 1/72 (1%)
Frame = +2
Query: 152 KDIEKPQAEIS-PIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRI 328
KD K E IHRIRITLTSRNV+SLEKVC+DLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4 KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63
Query: 329 TTRKTPCGEGSK 364
TTRKTPCGEGSK
Sbjct: 64 TTRKTPCGEGSK 75
>BC007507-1|AAH07507.1| 119|Homo sapiens ribosomal protein S20
protein.
Length = 119
Score = 111 bits (268), Expect = 5e-25
Identities = 55/72 (76%), Positives = 60/72 (83%), Gaps = 1/72 (1%)
Frame = +2
Query: 152 KDIEKPQAEIS-PIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRI 328
KD K E IHRIRITLTSRNV+SLEKVC+DLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4 KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63
Query: 329 TTRKTPCGEGSK 364
TTRKTPCGEGSK
Sbjct: 64 TTRKTPCGEGSK 75
>AB061842-1|BAB79480.1| 119|Homo sapiens ribosomal protein S20
protein.
Length = 119
Score = 111 bits (268), Expect = 5e-25
Identities = 55/72 (76%), Positives = 60/72 (83%), Gaps = 1/72 (1%)
Frame = +2
Query: 152 KDIEKPQAEIS-PIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRI 328
KD K E IHRIRITLTSRNV+SLEKVC+DLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4 KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63
Query: 329 TTRKTPCGEGSK 364
TTRKTPCGEGSK
Sbjct: 64 TTRKTPCGEGSK 75
>AB007156-1|BAA25820.1| 60|Homo sapiens ribosomal protein S20
protein.
Length = 60
Score = 56.0 bits (129), Expect = 3e-08
Identities = 24/25 (96%), Positives = 24/25 (96%)
Frame = +2
Query: 290 KGPVRMPTKVLRITTRKTPCGEGSK 364
KGPVRMPTK LRITTRKTPCGEGSK
Sbjct: 1 KGPVRMPTKTLRITTRKTPCGEGSK 25
>M60052-1|AAA88071.1| 699|Homo sapiens histidine-rich calcium
binding protein protein.
Length = 699
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -1
Query: 343 CFTC-CDAENLGRHSDWTLYTEFLFL 269
C +C CD EN+G H D + +F +L
Sbjct: 639 CESCHCDEENMGEHCDQCQHCQFCYL 664
>BC112355-1|AAI12356.1| 699|Homo sapiens histidine-rich
calcium-binding protein, precursor protein.
Length = 699
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -1
Query: 343 CFTC-CDAENLGRHSDWTLYTEFLFL 269
C +C CD EN+G H D + +F +L
Sbjct: 639 CESCHCDEENMGEHCDQCQHCQFCYL 664
>BC094691-1|AAH94691.1| 699|Homo sapiens histidine rich calcium
binding protein protein.
Length = 699
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -1
Query: 343 CFTC-CDAENLGRHSDWTLYTEFLFL 269
C +C CD EN+G H D + +F +L
Sbjct: 639 CESCHCDEENMGEHCDQCQHCQFCYL 664
>BC069802-1|AAH69802.1| 699|Homo sapiens histidine rich calcium
binding protein protein.
Length = 699
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -1
Query: 343 CFTC-CDAENLGRHSDWTLYTEFLFL 269
C +C CD EN+G H D + +F +L
Sbjct: 639 CESCHCDEENMGEHCDQCQHCQFCYL 664
>BC069795-1|AAH69795.1| 699|Homo sapiens histidine rich calcium
binding protein protein.
Length = 699
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -1
Query: 343 CFTC-CDAENLGRHSDWTLYTEFLFL 269
C +C CD EN+G H D + +F +L
Sbjct: 639 CESCHCDEENMGEHCDQCQHCQFCYL 664
>AK129876-1|BAC85246.1| 480|Homo sapiens protein ( Homo sapiens
cDNA FLJ26366 fis, clone HRT05814. ).
Length = 480
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -1
Query: 343 CFTC-CDAENLGRHSDWTLYTEFLFL 269
C +C CD EN+G H D + +F +L
Sbjct: 420 CESCHCDEENMGEHCDQCQHCQFCYL 445
>AF141968-1|AAF06360.1| 5373|Homo sapiens trabeculin-alpha protein.
Length = 5373
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = -2
Query: 255 RSEQTFSSERTLRDVSVILIRWIGEISAWGFSISFPDTTAAAMLL 121
R EQ RD +L+ W+ E F + PD T A L
Sbjct: 4749 RLEQALKQAEVFRDTVHMLLEWLSEAEQLRFRGALPDDTEALQSL 4793
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,581,450
Number of Sequences: 237096
Number of extensions: 1230838
Number of successful extensions: 2908
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2907
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2248517154
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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