Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_K01
(364 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132876-13|CAD21665.1| 117|Caenorhabditis elegans Hypothetical... 102 9e-23
AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical ... 29 1.00
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr... 28 1.7
AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical ... 28 2.3
AC006620-1|AAF39780.1| 754|Caenorhabditis elegans Hypothetical ... 28 2.3
AC024841-3|AAK68542.1| 185|Caenorhabditis elegans Hypothetical ... 27 3.0
AL110498-7|CAB57909.2| 302|Caenorhabditis elegans Hypothetical ... 27 4.0
AF038609-2|AAK29794.1| 226|Caenorhabditis elegans Hypothetical ... 27 4.0
AF038609-1|AAO61425.1| 234|Caenorhabditis elegans Hypothetical ... 27 4.0
AF003140-4|AAD47119.1| 2712|Caenorhabditis elegans Hypothetical ... 27 4.0
AF003140-3|AAM15563.1| 2710|Caenorhabditis elegans Hypothetical ... 27 4.0
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ... 27 5.3
AC006656-1|AAF39881.1| 592|Caenorhabditis elegans Hypothetical ... 27 5.3
Z22179-6|CAA80163.2| 165|Caenorhabditis elegans Hypothetical pr... 26 9.3
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ... 26 9.3
AF068708-5|AAK68200.1| 628|Caenorhabditis elegans P granule abn... 26 9.3
AF068708-4|AAC17755.1| 693|Caenorhabditis elegans P granule abn... 26 9.3
AF016688-5|AAB66073.1| 666|Caenorhabditis elegans Hypothetical ... 26 9.3
AB120729-1|BAC87886.1| 693|Caenorhabditis elegans PGL-3 protein. 26 9.3
>AL132876-13|CAD21665.1| 117|Caenorhabditis elegans Hypothetical
protein Y105E8A.16 protein.
Length = 117
Score = 102 bits (244), Expect = 9e-23
Identities = 46/58 (79%), Positives = 53/58 (91%)
Frame = +2
Query: 191 HRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRITTRKTPCGEGSK 364
HRIR+TLTS+NV+ LEKVC+ LI+GAK + L VKGP+RMPTKVLRITTRKTPCGEGSK
Sbjct: 17 HRIRLTLTSQNVKPLEKVCAQLIDGAKNEHLIVKGPIRMPTKVLRITTRKTPCGEGSK 74
>AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical
protein F28B3.1 protein.
Length = 1539
Score = 29.1 bits (62), Expect = 1.00
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 164 KPQAEISPIHRIRITLTSRNVRSLEKVCSDLINGAKK 274
+ +A+ SP HRI +TS+N CS L+ A++
Sbjct: 943 RSRAQSSPDHRILTLVTSKNAEQDTATCSTLLKRAER 979
>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical
protein H03E18.1 protein.
Length = 1147
Score = 28.3 bits (60), Expect = 1.7
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +2
Query: 233 LEKVCSDLINGAKKQKLRVKGPVRMPTKVLRITTRKTPCGE 355
+E V + + G KK+ + K + PTK +T++ P E
Sbjct: 359 VELVTAKTVEGEKKETKKPKSTTKKPTKTAAASTKRPPTTE 399
>AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical
protein Y79H2A.3a protein.
Length = 2129
Score = 27.9 bits (59), Expect = 2.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 362 WNPHRKVFYVL*CGEPWSAFGLDPLHGVFV 273
W + + FY G+PWS+ G P+ G V
Sbjct: 1447 WPGYEEHFYAKNTGKPWSSGGFKPIAGAKV 1476
>AC006620-1|AAF39780.1| 754|Caenorhabditis elegans Hypothetical
protein C51G7.3 protein.
Length = 754
Score = 27.9 bits (59), Expect = 2.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 362 WNPHRKVFYVL*CGEPWSAFGLDPLHGVFV 273
W + + FY G+PWS+ G P+ G V
Sbjct: 72 WPGYEEHFYAKNTGKPWSSGGFKPIAGAKV 101
>AC024841-3|AAK68542.1| 185|Caenorhabditis elegans Hypothetical
protein Y59H11AM.4 protein.
Length = 185
Score = 27.5 bits (58), Expect = 3.0
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = -2
Query: 180 ISAWGFSISFPDTTAAAMLLRYSGRDKQ---LSNQKLLSAEPEYSFVP 46
IS GFS FP T + +YS K +S +++ P+ S+ P
Sbjct: 6 ISIIGFSFMFPTFTLCSKKNKYSSNSKNPSTMSRKRVKRPAPQVSYTP 53
>AL110498-7|CAB57909.2| 302|Caenorhabditis elegans Hypothetical
protein Y64G10A.1 protein.
Length = 302
Score = 27.1 bits (57), Expect = 4.0
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -3
Query: 131 PCCCDIPVEINNF 93
PCC PVEINNF
Sbjct: 88 PCCNGSPVEINNF 100
>AF038609-2|AAK29794.1| 226|Caenorhabditis elegans Hypothetical
protein C54E4.2a protein.
Length = 226
Score = 27.1 bits (57), Expect = 4.0
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 128 MAAAVVSGKDIEKPQAEISPIH 193
++AA +S +D+EKP + P+H
Sbjct: 14 ISAAYISSEDLEKPSSADKPVH 35
>AF038609-1|AAO61425.1| 234|Caenorhabditis elegans Hypothetical
protein C54E4.2b protein.
Length = 234
Score = 27.1 bits (57), Expect = 4.0
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 128 MAAAVVSGKDIEKPQAEISPIH 193
++AA +S +D+EKP + P+H
Sbjct: 14 ISAAYISSEDLEKPSSADKPVH 35
>AF003140-4|AAD47119.1| 2712|Caenorhabditis elegans Hypothetical
protein C44E4.1a protein.
Length = 2712
Score = 27.1 bits (57), Expect = 4.0
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 170 QAEISPIHRIRITLTSRNVRSLEKVCSDLINGAK 271
Q+EIS I +IR TL + + K+ SDL G K
Sbjct: 1140 QSEISTIEKIRNTLNGDGYQGMYKLMSDLGLGWK 1173
>AF003140-3|AAM15563.1| 2710|Caenorhabditis elegans Hypothetical
protein C44E4.1c protein.
Length = 2710
Score = 27.1 bits (57), Expect = 4.0
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 170 QAEISPIHRIRITLTSRNVRSLEKVCSDLINGAK 271
Q+EIS I +IR TL + + K+ SDL G K
Sbjct: 1140 QSEISTIEKIRNTLNGDGYQGMYKLMSDLGLGWK 1173
>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
protein Y8A9A.2 protein.
Length = 1360
Score = 26.6 bits (56), Expect = 5.3
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -1
Query: 337 TCCDAENLGRHSDWTLYT 284
TCCD E G +DW +T
Sbjct: 1195 TCCDPEKTGLWNDWGAWT 1212
>AC006656-1|AAF39881.1| 592|Caenorhabditis elegans Hypothetical
protein H12I13.1 protein.
Length = 592
Score = 26.6 bits (56), Expect = 5.3
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 218 RNVRSLEKVC-SDLINGAKKQKLRVKGPVRMPTKVLRITTRKT 343
R+ +S KVC + L GAKK++ + K+L IT KT
Sbjct: 364 RDNKSSNKVCRTSLSGGAKKKRKERNARSEVGDKILGITETKT 406
>Z22179-6|CAA80163.2| 165|Caenorhabditis elegans Hypothetical
protein F58A4.6 protein.
Length = 165
Score = 25.8 bits (54), Expect = 9.3
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = -2
Query: 162 SISFPDTTAAAMLLRYSGRDKQLSNQKLLSAEPEYSFVP-RAEFNTP 25
S P T+ +++ ++ D +L EYSF RA +N P
Sbjct: 7 STEIPSTSTQSLVFEFTNLDDLYGFLNILQCREEYSFAQIRAFYNIP 53
>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
protein Y18D10A.1 protein.
Length = 1634
Score = 25.8 bits (54), Expect = 9.3
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +2
Query: 176 EISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRITTRK 340
+I P +I + S + S + + SD++ GAK K P PT+V + T K
Sbjct: 1064 KIPPKIKISLPAPSSSTTSDDDLMSDILAGAKTTK--TTKPKAPPTRVAQTTRTK 1116
>AF068708-5|AAK68200.1| 628|Caenorhabditis elegans P granule
abnormality protein 3,isoform b protein.
Length = 628
Score = 25.8 bits (54), Expect = 9.3
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +2
Query: 215 SRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRITTRKTP 346
+R + SLEK S + KQ GP + T +T K P
Sbjct: 374 NRIIESLEKSSSSEPSATAKQTTTSNGPTTVSTAAQVVTVEKMP 417
>AF068708-4|AAC17755.1| 693|Caenorhabditis elegans P granule
abnormality protein 3,isoform a protein.
Length = 693
Score = 25.8 bits (54), Expect = 9.3
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +2
Query: 215 SRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRITTRKTP 346
+R + SLEK S + KQ GP + T +T K P
Sbjct: 439 NRIIESLEKSSSSEPSATAKQTTTSNGPTTVSTAAQVVTVEKMP 482
>AF016688-5|AAB66073.1| 666|Caenorhabditis elegans Hypothetical
protein F18A12.7 protein.
Length = 666
Score = 25.8 bits (54), Expect = 9.3
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 198 IRWIGEISAWGFSISFPDTTAAAMLLRYSGRD 103
IR I ++AWG I TT M LR+ D
Sbjct: 382 IRKIDVLAAWGIDIEVWTTTGKRMRLRFKKDD 413
>AB120729-1|BAC87886.1| 693|Caenorhabditis elegans PGL-3 protein.
Length = 693
Score = 25.8 bits (54), Expect = 9.3
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +2
Query: 215 SRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRITTRKTP 346
+R + SLEK S + KQ GP + T +T K P
Sbjct: 439 NRIIESLEKSSSSEPSATAKQTTTSNGPTTVSTAAQVVTVEKMP 482
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,854,582
Number of Sequences: 27780
Number of extensions: 172879
Number of successful extensions: 517
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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