Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_J24
(247 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 0.60
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 26 0.60
SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces pomb... 26 0.60
SPAC19D5.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 0.80
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 25 1.1
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 1.4
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 25 1.4
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ... 24 3.2
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 24 3.2
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa... 24 3.2
SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar... 23 4.3
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 23 4.3
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 23 5.6
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 23 5.6
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 23 5.6
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p... 23 5.6
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 23 7.4
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 23 7.4
SPCC4B3.01 ||SPCP25A2.01c|thiosulfate sulfurtransferase|Schizosa... 22 9.8
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 22 9.8
SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|ch... 22 9.8
SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom... 22 9.8
>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 0.60
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +2
Query: 104 RLRHATPESSTEDTSQCAPPS--TGGSA 181
R +A P+ + DTS +PPS TGG A
Sbjct: 17 RTAYAAPQRAAVDTSNVSPPSTQTGGYA 44
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 26.2 bits (55), Expect = 0.60
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 126 NPAPKTRRSAHRPQLGGVLWHPSGG 200
NP +T +AH PQ GVL P G
Sbjct: 431 NPLTETLANAHNPQFSGVLNLPGLG 455
>SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 26.2 bits (55), Expect = 0.60
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = +2
Query: 8 DRARTRTHLVHSVDTDSESSESPCATCSDQLYRLRHATPES 130
D+ R + ++++ + S DQ+Y L+H PES
Sbjct: 123 DQYRMTLKSIRNIESSVQPSREKKQKLLDQIYALKHKDPES 163
>SPAC19D5.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 87
Score = 25.8 bits (54), Expect = 0.80
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -2
Query: 135 VLDSGVACRSR*SWSEHVAHGDSLDSESVS 46
V DS + +S SWS H+ HG ++ S S+S
Sbjct: 46 VHDSTIGVKS--SWSRHLIHGINIFSFSIS 73
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 25.4 bits (53), Expect = 1.1
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +2
Query: 5 DDRARTRTHLVHSVDTDSESS--ESPCATCSDQLYRLRHATPESSTEDTSQCAP-PSTGG 175
DD+ + + ++HSVDT S+ P A S+ +L+ T E T + C P PS
Sbjct: 159 DDKIQRQMKILHSVDTIDPSTVQNYPSADMSNPEVKLK--TEEIITPMDTTCKPEPSAKK 216
Query: 176 SAVAP 190
++P
Sbjct: 217 IKLSP 221
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 25.0 bits (52), Expect = 1.4
Identities = 13/40 (32%), Positives = 16/40 (40%)
Frame = +3
Query: 51 PTQSQANPRALHAPTNSTDCGTRRPNPAPKTRRSAHRPQL 170
P + PR L A T+S G P P + RP L
Sbjct: 223 PPPAPPKPRRLAARTSSNSSGVSSPTSVPPPVQRNTRPNL 262
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 25.0 bits (52), Expect = 1.4
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +2
Query: 47 DTDSESSESPCATCSDQLYRLRHATPESSTEDTSQCAPPSTGGSAVAP 190
+T +S+ P + + R ATP S+ + APP+T + AP
Sbjct: 422 ETQDKSTVVPQESATATPKRSPSATPTSALPPIGKFAPPTTAKAQPAP 469
>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 23.8 bits (49), Expect = 3.2
Identities = 12/45 (26%), Positives = 17/45 (37%)
Frame = +2
Query: 26 THLVHSVDTDSESSESPCATCSDQLYRLRHATPESSTEDTSQCAP 160
TH + S T+ + C T L R H E ++ Q P
Sbjct: 191 THNLGSFVTNPHADSQECPTPQSLLMRASHHMSERGSQQAHQTTP 235
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 23.8 bits (49), Expect = 3.2
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +3
Query: 72 PRALHAPTNSTDCGTRRPNPAPKTRRSAHRP 164
PR AP N T R PK R + ++P
Sbjct: 239 PRRGRAPNNPTSDSISRSKAVPKDRINMYQP 269
>SPAC32A11.03c |phx1||homeobox transcription factor
Phx1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 23.8 bits (49), Expect = 3.2
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 41 SVDTDSESSESPCATCSDQLYRLRHATPESSTEDTSQCAPPSTGG 175
SV + ESP ++ + L +R PES + PS+GG
Sbjct: 351 SVSNQAFDVESPPSSYATPLTGIRMPQPESDLYSYPREVSPSSGG 395
>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 23.4 bits (48), Expect = 4.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 5 DDRARTRTHLVHSVDTDSES 64
++ A TR HLVHS + + ES
Sbjct: 332 NELAMTRPHLVHSCNLNIES 351
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 23.4 bits (48), Expect = 4.3
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 113 HATPESSTEDTSQCAPPSTGGS 178
HA+P + T + AP TGG+
Sbjct: 838 HASPGAKTSPNASRAPEPTGGT 859
>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 681
Score = 23.0 bits (47), Expect = 5.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 113 HATPESSTEDTSQCAPPST 169
H+TP T S+CA PS+
Sbjct: 304 HSTPIHPTTPVSRCARPSS 322
>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
Length = 624
Score = 23.0 bits (47), Expect = 5.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 114 TRRPNPAPKTRRSAHR 161
T RP+ AP TRRS+ R
Sbjct: 63 TMRPSLAPNTRRSSVR 78
>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 23.0 bits (47), Expect = 5.6
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 69 NPRALHAPTNSTDCGTRR 122
+P+AL +PT +D TRR
Sbjct: 369 SPKALKSPTKISDLETRR 386
>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 23.0 bits (47), Expect = 5.6
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 118 DARIQHRRHVAVRTALNWGECCGTLAVGRHGS 213
D R+ +H+ R +L GECC A R+ S
Sbjct: 131 DYRLVVPKHIFARWSLLVGECCAH-ATARYDS 161
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 22.6 bits (46), Expect = 7.4
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = +3
Query: 12 APALGRTWCILSTPTQSQANPRALHAPTNSTDCGTRRPNPAPKTRR 149
A GRT S ++ Q PR PT T G +P + R+
Sbjct: 358 ASRTGRTVIPRSIDSRYQVAPRVRLNPTAMTIAGRMKPADTEQVRK 403
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 22.6 bits (46), Expect = 7.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2
Query: 201 PHR*GATALPPVEGGAHCDVSSVLDS 124
PH G+T L + G D++SV+D+
Sbjct: 1183 PHLLGSTILESLLYGVDRDINSVMDA 1208
>SPCC4B3.01 ||SPCP25A2.01c|thiosulfate
sulfurtransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 298
Score = 22.2 bits (45), Expect = 9.8
Identities = 8/23 (34%), Positives = 11/23 (47%)
Frame = +1
Query: 10 PRPHSDAPGAFCRHRLRVKRIPV 78
P+P D F H L K +P+
Sbjct: 226 PKPEEDLEKVFSSHGLTDKSVPI 248
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 22.2 bits (45), Expect = 9.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +2
Query: 41 SVDTDSESSESPCATCSDQLYRLR 112
+V+ SE E PC CS +++ R
Sbjct: 447 AVENLSELCERPCQDCSLSVFKQR 470
>SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 440
Score = 22.2 bits (45), Expect = 9.8
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = -3
Query: 239 DTEYMAAGADPCLPTARVPQHSPQLRAVRTATCLR 135
D EY+ D PT V + + LR+ LR
Sbjct: 291 DIEYLLTNLDTIFPTESVTKFATDLRSFSAKGQLR 325
>SPBC17D1.02 |||diphthamide biosynthesis protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 503
Score = 22.2 bits (45), Expect = 9.8
Identities = 9/30 (30%), Positives = 14/30 (46%)
Frame = +1
Query: 142 HVAVRTALNWGECCGTLAVGRHGSAPAAMY 231
+V + N+G CC H SA A ++
Sbjct: 80 NVQILADTNYGSCCVDEVAAEHMSADAIVH 109
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,075,047
Number of Sequences: 5004
Number of extensions: 18705
Number of successful extensions: 69
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 43306998
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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