Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_J24
(247 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82269-1|CAB05205.2| 651|Caenorhabditis elegans Hypothetical pr... 31 0.11
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr... 31 0.14
Z83228-9|CAB05737.2| 539|Caenorhabditis elegans Hypothetical pr... 29 0.33
U67079-1|AAB40716.1| 539|Caenorhabditis elegans C2-HC type zinc... 29 0.33
Z35641-1|CAA84706.2| 863|Caenorhabditis elegans Hypothetical pr... 29 0.44
AC024877-12|AAF60902.1| 128|Caenorhabditis elegans Hypothetical... 28 0.76
Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical pr... 28 1.0
Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical pr... 28 1.0
AF024491-4|AAZ82855.1| 365|Caenorhabditis elegans Hypothetical ... 27 1.3
AF024491-3|AAB70311.2| 420|Caenorhabditis elegans Hypothetical ... 27 1.3
Z47068-3|CAD56568.1| 278|Caenorhabditis elegans Hypothetical pr... 27 2.3
Z47068-2|CAB54215.1| 205|Caenorhabditis elegans Hypothetical pr... 27 2.3
Z47068-1|CAA87331.1| 279|Caenorhabditis elegans Hypothetical pr... 27 2.3
U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily ass... 26 3.1
DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein. 26 3.1
Z81034-4|CAB02729.1| 541|Caenorhabditis elegans Hypothetical pr... 26 4.1
Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical pr... 26 4.1
Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical p... 26 4.1
X56212-1|CAA39669.1| 1613|Caenorhabditis elegans vitellogenin pr... 26 4.1
U56966-6|ABS19472.1| 1558|Caenorhabditis elegans Vitellogenin st... 26 4.1
U56966-5|AAA98720.1| 1613|Caenorhabditis elegans Vitellogenin st... 26 4.1
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 26 4.1
U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription f... 26 4.1
U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein ( Caeno... 26 4.1
Z81521-4|CAB04229.1| 367|Caenorhabditis elegans Hypothetical pr... 25 5.4
U47144-3|AAB52619.1| 292|Caenorhabditis elegans Hypothetical pr... 25 5.4
AF099925-14|AAX55690.1| 679|Caenorhabditis elegans Calcium bind... 25 5.4
Z92828-5|CAB07332.2| 586|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z82080-4|CAC70117.1| 1125|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z81449-6|CAB03764.2| 489|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z81449-5|CAB03762.2| 488|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z75533-3|CAA99822.1| 868|Caenorhabditis elegans Hypothetical pr... 25 7.1
AF468834-1|AAL77082.1| 586|Caenorhabditis elegans PRY-1 protein. 25 7.1
AF039710-10|AAB96693.2| 393|Caenorhabditis elegans Hypothetical... 25 7.1
Z81134-7|CAD56602.1| 879|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z68219-5|CAJ43449.1| 343|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z68219-4|CAA92482.2| 359|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical p... 25 9.4
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr... 25 9.4
CU457740-4|CAM36334.1| 735|Caenorhabditis elegans Hypothetical ... 25 9.4
AL117202-32|CAD56611.1| 879|Caenorhabditis elegans Hypothetical... 25 9.4
AL031635-6|CAA21044.1| 761|Caenorhabditis elegans Hypothetical ... 25 9.4
AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily a... 25 9.4
AF024503-9|AAG24084.1| 327|Caenorhabditis elegans Serpentine re... 25 9.4
AF002197-4|AAD34659.1| 393|Caenorhabditis elegans Hypothetical ... 25 9.4
>Z82269-1|CAB05205.2| 651|Caenorhabditis elegans Hypothetical
protein F52G2.3 protein.
Length = 651
Score = 31.1 bits (67), Expect = 0.11
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 60 SQANPRALHAPTNSTDCGTRRPNPAPKTRRSAHRPQ 167
S P + H+ T + C + RP P P R+ + +PQ
Sbjct: 204 SAHQPSSNHSYTGRSSCDSLRPQPVPAARKLSEQPQ 239
>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
F47A4.2 protein.
Length = 3498
Score = 30.7 bits (66), Expect = 0.14
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +3
Query: 78 ALHAPTNSTDCGTRRPNPAPKTRRSAHRPQLGG 176
A +AP + D T P PAP TR A R + GG
Sbjct: 2290 ATNAPETNKDMDTSTPKPAPVTRSPATRGRGGG 2322
>Z83228-9|CAB05737.2| 539|Caenorhabditis elegans Hypothetical
protein F52F12.6 protein.
Length = 539
Score = 29.5 bits (63), Expect = 0.33
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 47 DTDSESSESPCATCSDQLYRLRHATPES 130
DT S+ SESP +T SD + R PES
Sbjct: 34 DTHSDGSESPDSTASDSSDKKRRRKPES 61
>U67079-1|AAB40716.1| 539|Caenorhabditis elegans C2-HC type zinc
finger proteinC.e-MyT1 protein.
Length = 539
Score = 29.5 bits (63), Expect = 0.33
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 47 DTDSESSESPCATCSDQLYRLRHATPES 130
DT S+ SESP +T SD + R PES
Sbjct: 34 DTHSDGSESPDSTASDSSDKKRRRKPES 61
>Z35641-1|CAA84706.2| 863|Caenorhabditis elegans Hypothetical
protein C38H2.1 protein.
Length = 863
Score = 29.1 bits (62), Expect = 0.44
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 23 RTHLVHSVDTDSESSESPCATCSDQLYRLRHATPESSTE 139
RTHL+H VDT + + C ++ ++ A P E
Sbjct: 494 RTHLLHLVDTKTLICDDDCDPVDEKFWKQARAEPTEENE 532
>AC024877-12|AAF60902.1| 128|Caenorhabditis elegans Hypothetical
protein Y95B8A.2 protein.
Length = 128
Score = 28.3 bits (60), Expect = 0.76
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 51 PTQSQANPRALHAPTNSTDCGTRRPNPAPKTR-RSAHRPQ 167
P + A PR+ APTN D T PAPK + R+A P+
Sbjct: 72 PAPAAAGPRSAPAPTNE-DYNTDIDVPAPKAKARAAPTPR 110
>Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical
protein F39B1.1 protein.
Length = 1607
Score = 27.9 bits (59), Expect = 1.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 247 PPGTPSTWQRERTRASPPLGCHSTPP 170
PP P + R + SPP+ H TPP
Sbjct: 142 PPPPPVPPRHSRVQQSPPVPIHPTPP 167
>Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical
protein F39B1.1 protein.
Length = 1607
Score = 27.9 bits (59), Expect = 1.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 247 PPGTPSTWQRERTRASPPLGCHSTPP 170
PP P + R + SPP+ H TPP
Sbjct: 142 PPPPPVPPRHSRVQQSPPVPIHPTPP 167
>AF024491-4|AAZ82855.1| 365|Caenorhabditis elegans Hypothetical
protein C24A1.2b protein.
Length = 365
Score = 27.5 bits (58), Expect = 1.3
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +3
Query: 39 ILSTPTQSQANPRALHAPTNSTDCGTRRPNPAPKTRRSAHRPQLGG 176
+L+T T S NP LH T PNPAP +R+ + Q G
Sbjct: 193 LLTTCTPS--NPSLLHPYLLDTSRRFSEPNPAPLAQRTPGKKQKDG 236
>AF024491-3|AAB70311.2| 420|Caenorhabditis elegans Hypothetical
protein C24A1.2a protein.
Length = 420
Score = 27.5 bits (58), Expect = 1.3
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +3
Query: 39 ILSTPTQSQANPRALHAPTNSTDCGTRRPNPAPKTRRSAHRPQLGG 176
+L+T T S NP LH T PNPAP +R+ + Q G
Sbjct: 248 LLTTCTPS--NPSLLHPYLLDTSRRFSEPNPAPLAQRTPGKKQKDG 291
>Z47068-3|CAD56568.1| 278|Caenorhabditis elegans Hypothetical
protein F15G9.1c protein.
Length = 278
Score = 26.6 bits (56), Expect = 2.3
Identities = 13/56 (23%), Positives = 26/56 (46%)
Frame = +3
Query: 42 LSTPTQSQANPRALHAPTNSTDCGTRRPNPAPKTRRSAHRPQLGGVLWHPSGGEAR 209
+S+P + ++ +L A N + R P+P + +LGG+ W P + +
Sbjct: 173 VSSPVKEVSSAASLFANDNGNETENRTPSPTVLNAK-----KLGGIPWPPKSSDVK 223
>Z47068-2|CAB54215.1| 205|Caenorhabditis elegans Hypothetical
protein F15G9.1b protein.
Length = 205
Score = 26.6 bits (56), Expect = 2.3
Identities = 13/56 (23%), Positives = 26/56 (46%)
Frame = +3
Query: 42 LSTPTQSQANPRALHAPTNSTDCGTRRPNPAPKTRRSAHRPQLGGVLWHPSGGEAR 209
+S+P + ++ +L A N + R P+P + +LGG+ W P + +
Sbjct: 100 VSSPVKEVSSAASLFANDNGNETENRTPSPTVLNAK-----KLGGIPWPPKSSDVK 150
>Z47068-1|CAA87331.1| 279|Caenorhabditis elegans Hypothetical
protein F15G9.1a protein.
Length = 279
Score = 26.6 bits (56), Expect = 2.3
Identities = 13/56 (23%), Positives = 26/56 (46%)
Frame = +3
Query: 42 LSTPTQSQANPRALHAPTNSTDCGTRRPNPAPKTRRSAHRPQLGGVLWHPSGGEAR 209
+S+P + ++ +L A N + R P+P + +LGG+ W P + +
Sbjct: 174 VSSPVKEVSSAASLFANDNGNETENRTPSPTVLNAK-----KLGGIPWPPKSSDVK 224
>U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily
assigned gene nameprotein 326 protein.
Length = 560
Score = 26.2 bits (55), Expect = 3.1
Identities = 19/59 (32%), Positives = 26/59 (44%)
Frame = +3
Query: 66 ANPRALHAPTNSTDCGTRRPNPAPKTRRSAHRPQLGGVLWHPSGGEARVRSRCHVLGVP 242
A+PR +P+ R P+ +P TRR + P PS + VR R H G P
Sbjct: 487 ASPRRRRSPSPERQRKRRSPSDSPPTRRLSTSPIRR--RRSPSPNKLPVRRRRHDSGSP 543
>DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein.
Length = 560
Score = 26.2 bits (55), Expect = 3.1
Identities = 19/59 (32%), Positives = 26/59 (44%)
Frame = +3
Query: 66 ANPRALHAPTNSTDCGTRRPNPAPKTRRSAHRPQLGGVLWHPSGGEARVRSRCHVLGVP 242
A+PR +P+ R P+ +P TRR + P PS + VR R H G P
Sbjct: 487 ASPRRRRSPSPERQRKRRSPSDSPPTRRLSTSPIRR--RRSPSPNKLPVRRRRHDSGSP 543
>Z81034-4|CAB02729.1| 541|Caenorhabditis elegans Hypothetical
protein C15C6.3 protein.
Length = 541
Score = 25.8 bits (54), Expect = 4.1
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +2
Query: 11 RARTRTHLVHSVDTDSESSESPCATCSDQLYRLRHATPESSTEDTSQCAPP 163
RAR R+H S + S + S Q ++ TP S + + +PP
Sbjct: 256 RARRRSHRSRSRTYSTSSDRGSSSKRSRQQQHMKRKTPSSPSRRSRSRSPP 306
>Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 39 ILSTPTQSQANPRALHAPTNSTDCGTRRPNPAPKT 143
I +T + S P APT++TD +P AP T
Sbjct: 95 IHATSSTSTTAPSTAPAPTSTTDVLELKPTTAPAT 129
>Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 39 ILSTPTQSQANPRALHAPTNSTDCGTRRPNPAPKT 143
I +T + S P APT++TD +P AP T
Sbjct: 95 IHATSSTSTTAPSTAPAPTSTTDVLELKPTTAPAT 129
>X56212-1|CAA39669.1| 1613|Caenorhabditis elegans vitellogenin
protein.
Length = 1613
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +1
Query: 85 MLRPTLPTAARDARIQHRRHVAVRTALNWG 174
++RP +P++ R R Q R V + WG
Sbjct: 1133 VVRPEMPSSLRQLRDQPHREVQLSLTSTWG 1162
>U56966-6|ABS19472.1| 1558|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 2, isoform
b protein.
Length = 1558
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +1
Query: 85 MLRPTLPTAARDARIQHRRHVAVRTALNWG 174
++RP +P++ R R Q R V + WG
Sbjct: 1133 VVRPEMPSSLRQLRDQPHREVQLSLTSTWG 1162
>U56966-5|AAA98720.1| 1613|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 2, isoform
a protein.
Length = 1613
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +1
Query: 85 MLRPTLPTAARDARIQHRRHVAVRTALNWG 174
++RP +P++ R R Q R V + WG
Sbjct: 1133 VVRPEMPSSLRQLRDQPHREVQLSLTSTWG 1162
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 227 MAAGADPCLPTARVPQHS 174
+A+ ADP LPT+ VPQ S
Sbjct: 68 IASSADPILPTSVVPQPS 85
>U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription
factor E12/47 homolog protein.
Length = 399
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 39 ILSTPTQSQANPRALHAPTNSTDCGTRRPNPAPKT 143
I +T + S P APT++TD +P AP T
Sbjct: 95 IHATSSTSTTAPSTAPAPTSTTDVLELKPTTAPAT 129
>U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein (
Caenorhabditis elegansN2 basic-helix-loop-helix
transcription factor E12/47homolog mRNA, complete cds.
).
Length = 399
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 39 ILSTPTQSQANPRALHAPTNSTDCGTRRPNPAPKT 143
I +T + S P APT++TD +P AP T
Sbjct: 95 IHATSSTSTTAPSTAPAPTSTTDVLELKPTTAPAT 129
>Z81521-4|CAB04229.1| 367|Caenorhabditis elegans Hypothetical
protein F32A11.6 protein.
Length = 367
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +3
Query: 45 STPTQSQANPRALHAPTNSTDCGTRRPNPA 134
S+P +S ++ + +P +C T RP+P+
Sbjct: 254 SSPMKSSSDSSHMRSPMAQMNCETTRPHPS 283
>U47144-3|AAB52619.1| 292|Caenorhabditis elegans Hypothetical
protein ZC53.6 protein.
Length = 292
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = +3
Query: 60 SQANPRALHAPTNSTDCGTRRPNPAPKTRRSAHRPQL 170
S A P + APT S C RP T P+L
Sbjct: 2 SDATPSSSEAPTPSGQCSRLRPRSKNSTAPEPPAPKL 38
>AF099925-14|AAX55690.1| 679|Caenorhabditis elegans Calcium binding
protein homologprotein 1, isoform d protein.
Length = 679
Score = 25.4 bits (53), Expect = 5.4
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +3
Query: 30 TWCILSTPTQSQANPRALHAPTNS-TDCGTRRPNPAPKTRRSAHRP 164
T +ST T + + P + +PT + T T P P R + RP
Sbjct: 584 TTTTVSTTTITTSTPPSTTSPTTTVTPVATSSATPKPSKRTTTRRP 629
>Z92828-5|CAB07332.2| 586|Caenorhabditis elegans Hypothetical
protein C37A5.9 protein.
Length = 586
Score = 25.0 bits (52), Expect = 7.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 5 DDRARTRTHLVHSVDTDSESSESPCA 82
D A ++H H +DT+ S+S CA
Sbjct: 401 DTSASLKSHRHHQIDTNRMMSQSMCA 426
>Z82080-4|CAC70117.1| 1125|Caenorhabditis elegans Hypothetical
protein W09G3.6 protein.
Length = 1125
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/44 (27%), Positives = 18/44 (40%)
Frame = +3
Query: 66 ANPRALHAPTNSTDCGTRRPNPAPKTRRSAHRPQLGGVLWHPSG 197
+ P+AL + S+ CG P P K +L W +G
Sbjct: 501 STPQALRERSRSSPCGPESPIPLEKRASEPASLELRQEYWRKNG 544
>Z81449-6|CAB03764.2| 489|Caenorhabditis elegans Hypothetical
protein C46F11.5b protein.
Length = 489
Score = 25.0 bits (52), Expect = 7.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 133 HRRHVAVRTALNWGECCGTLAVGRHGS 213
HR ++VR ++ W CC + VG+ S
Sbjct: 314 HRIAISVRDSILWPICCLMVEVGKQVS 340
>Z81449-5|CAB03762.2| 488|Caenorhabditis elegans Hypothetical
protein C46F11.5a protein.
Length = 488
Score = 25.0 bits (52), Expect = 7.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 133 HRRHVAVRTALNWGECCGTLAVGRHGS 213
HR ++VR ++ W CC + VG+ S
Sbjct: 314 HRIAISVRDSILWPICCLMVEVGKQVS 340
>Z75533-3|CAA99822.1| 868|Caenorhabditis elegans Hypothetical
protein C54G4.4 protein.
Length = 868
Score = 25.0 bits (52), Expect = 7.1
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -1
Query: 235 PSTWQRERTRASPPLGCHSTPP 170
P TW+ ++R PP S+PP
Sbjct: 35 PLTWKGAQSRGRPPRVVRSSPP 56
>AF468834-1|AAL77082.1| 586|Caenorhabditis elegans PRY-1 protein.
Length = 586
Score = 25.0 bits (52), Expect = 7.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 5 DDRARTRTHLVHSVDTDSESSESPCA 82
D A ++H H +DT+ S+S CA
Sbjct: 401 DTSASLKSHRHHQIDTNRMMSQSMCA 426
>AF039710-10|AAB96693.2| 393|Caenorhabditis elegans Hypothetical
protein C46E10.9 protein.
Length = 393
Score = 25.0 bits (52), Expect = 7.1
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 38 HSVDTDSESSESPCATCSDQLYRLRHATPESSTEDTSQCAPPS 166
HS D +S +P +TCS + + +T ESS+ S P+
Sbjct: 323 HSTDL---TSSAPASTCSTRWSPMTVSTSESSSTSESSSGMPT 362
>Z81134-7|CAD56602.1| 879|Caenorhabditis elegans Hypothetical
protein T28D6.5b protein.
Length = 879
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +2
Query: 23 RTHLVHSVDTDSESSESPCATCSD 94
+ HL H+ ++DSE E P D
Sbjct: 772 QNHLNHNTESDSEEEEEPARVQDD 795
>Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical
protein F21G4.2 protein.
Length = 1573
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +3
Query: 81 LHAPTNSTDCGTRRPNPAPKTRR 149
L AP + RRPNP P TRR
Sbjct: 53 LLAPILTAQIFYRRPNPIPWTRR 75
>Z68219-5|CAJ43449.1| 343|Caenorhabditis elegans Hypothetical
protein T05A1.5b protein.
Length = 343
Score = 24.6 bits (51), Expect = 9.4
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +1
Query: 157 TALNWGECCGTLAVGRHGSA 216
T +NW CC +++ HG A
Sbjct: 190 TMINWVMCCESISFSGHGYA 209
>Z68219-4|CAA92482.2| 359|Caenorhabditis elegans Hypothetical
protein T05A1.5a protein.
Length = 359
Score = 24.6 bits (51), Expect = 9.4
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +1
Query: 157 TALNWGECCGTLAVGRHGSA 216
T +NW CC +++ HG A
Sbjct: 206 TMINWVMCCESISFSGHGYA 225
>Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical
protein F21G4.2 protein.
Length = 1573
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +3
Query: 81 LHAPTNSTDCGTRRPNPAPKTRR 149
L AP + RRPNP P TRR
Sbjct: 53 LLAPILTAQIFYRRPNPIPWTRR 75
>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein
F40H6.5 protein.
Length = 1288
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 247 PPGTPSTWQRERTRASPPLGCHSTPPS 167
PP TP+T T +P L ST PS
Sbjct: 1152 PPTTPTTTTSTTTTTTPKLTTTSTLPS 1178
>CU457740-4|CAM36334.1| 735|Caenorhabditis elegans Hypothetical
protein C50E10.4 protein.
Length = 735
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 59 ESSESPCATCSDQLYRLRHATPESSTEDTSQCAPPSTGGS 178
E + P ++++ + A PE T++ APPST S
Sbjct: 451 EPKKEPVDEPAEKIPKRSEAAPEVPATATTKEAPPSTSSS 490
>AL117202-32|CAD56611.1| 879|Caenorhabditis elegans Hypothetical
protein T28D6.5b protein.
Length = 879
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +2
Query: 23 RTHLVHSVDTDSESSESPCATCSD 94
+ HL H+ ++DSE E P D
Sbjct: 772 QNHLNHNTESDSEEEEEPARVQDD 795
>AL031635-6|CAA21044.1| 761|Caenorhabditis elegans Hypothetical
protein Y47D3B.9 protein.
Length = 761
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = -3
Query: 224 AAGADPCLPTARVPQHSPQLRAVRTATCLRCW 129
AAG P T+ + +H L + C+ CW
Sbjct: 343 AAGMRPHKKTSEIWEHYKCLNEKQNVECIYCW 374
>AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily
assigned gene nameprotein 218, isoform a protein.
Length = 1136
Score = 24.6 bits (51), Expect = 9.4
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +2
Query: 11 RARTRTHLVHSVDTDSESSESPCATCSDQLYRLRHATPESSTEDTSQCAPP 163
R +T + +V S + S S+ ++ R+ P SS+ED S +PP
Sbjct: 112 RLQTTSMIVESSPSPSFHSKKDGHPVYEERCRVSLTIPISSSEDLSAVSPP 162
>AF024503-9|AAG24084.1| 327|Caenorhabditis elegans Serpentine
receptor, class h protein266 protein.
Length = 327
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 40 FCRHRLRVKRIPVRYMLRPTLPT 108
FC L ++PVR + PT PT
Sbjct: 293 FCMRALAKLKLPVRVRVLPTRPT 315
>AF002197-4|AAD34659.1| 393|Caenorhabditis elegans Hypothetical
protein F20H11.6 protein.
Length = 393
Score = 24.6 bits (51), Expect = 9.4
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +2
Query: 2 HDDRARTRTHLVHSVDTDSESSESPCATCSDQLYRLRHATPESSTED 142
HDD ++ ++ H+ E+ + S Y ATP STED
Sbjct: 32 HDDAGQSFSNNTHTPSVSQFFDETSNDSHSSSAYYTPMATPFVSTED 78
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,617,900
Number of Sequences: 27780
Number of extensions: 131148
Number of successful extensions: 614
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,740,198
effective HSP length: 61
effective length of database: 11,045,618
effective search space used: 220912360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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