Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_J23
         (228 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   0.77 
SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein Rga5|Sch...    23   5.4  
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    23   7.2  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    23   7.2  

>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 0.77
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 101 HKLIINVNSINRCLEMQFTR 42
           +K IINVNS+ R L+M+  R
Sbjct: 313 YKTIINVNSLFRILDMEIER 332


>SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein
           Rga5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 164 SSRNSLTADIMMTPFQTG*FNH 99
           SS+N +TAD +   FQ G  +H
Sbjct: 196 SSKNLMTADNLAAIFQPGILSH 217


>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -2

Query: 131 MTPFQTG*FNHKLIINVNSINRCLEMQFTRCTRDQADIN 15
           + P+  G     L++  ++++ CL    T+     ADIN
Sbjct: 501 LLPWVRGYSGSLLVLGSSNVDECLRGYLTKYDCSSADIN 539


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 205 LSLSVPRSFCHLAS 164
           +SLS+P S C LAS
Sbjct: 422 MSLSIPPSLCFLAS 435


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 781,699
Number of Sequences: 5004
Number of extensions: 10624
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 2,362,478
effective HSP length: 55
effective length of database: 2,087,258
effective search space used: 41745160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)