Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_J23
(228 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 22 0.83
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 22 0.83
DQ071552-1|AAY82248.1| 495|Apis mellifera anarchy 1 protein. 21 1.9
EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein. 21 2.5
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 2.5
AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein. 21 2.5
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 20 4.4
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 19 5.9
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 19 5.9
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 19 5.9
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 19 5.9
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 22.2 bits (45), Expect = 0.83
Identities = 8/29 (27%), Positives = 15/29 (51%)
Frame = -1
Query: 219 LPLLHCHYRCLGHSATSQVI*ELINCRYH 133
+PLL ++ C+ S V+ ++ YH
Sbjct: 291 VPLLGTYFNCIMFMVASSVVSTILILNYH 319
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 22.2 bits (45), Expect = 0.83
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = -1
Query: 207 HCH-YRCLGHSATSQVI*ELINCRYHD 130
HC +R HS +S L+ C +HD
Sbjct: 128 HCELHRAACHSGSSLTKSRLMRCLHHD 154
>DQ071552-1|AAY82248.1| 495|Apis mellifera anarchy 1 protein.
Length = 495
Score = 21.0 bits (42), Expect = 1.9
Identities = 6/17 (35%), Positives = 14/17 (82%)
Frame = -2
Query: 188 SVILPPRKSSRNSLTAD 138
++I+PP+KS +++ +D
Sbjct: 427 NMIIPPKKSDMSNMQSD 443
>EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein.
Length = 683
Score = 20.6 bits (41), Expect = 2.5
Identities = 8/28 (28%), Positives = 16/28 (57%)
Frame = +1
Query: 142 AVNEFLDDLRGGRMTEAPIVTVEQGQLQ 225
AVNEF+ L+ G + + T+ +++
Sbjct: 76 AVNEFMQLLKHGMLPRGQVFTMMNKEMR 103
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 20.6 bits (41), Expect = 2.5
Identities = 7/29 (24%), Positives = 15/29 (51%)
Frame = -1
Query: 219 LPLLHCHYRCLGHSATSQVI*ELINCRYH 133
+PLL ++ C+ S V+ ++ +H
Sbjct: 322 IPLLGSYFNCIMFMVASSVVLTVLVLNFH 350
>AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein.
Length = 683
Score = 20.6 bits (41), Expect = 2.5
Identities = 8/28 (28%), Positives = 16/28 (57%)
Frame = +1
Query: 142 AVNEFLDDLRGGRMTEAPIVTVEQGQLQ 225
AVNEF+ L+ G + + T+ +++
Sbjct: 76 AVNEFMQLLKHGMLPRGQVFTMMNKEMR 103
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 19.8 bits (39), Expect = 4.4
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -3
Query: 226 PEAAPAPLSLSV 191
PEAAPA ++L V
Sbjct: 270 PEAAPARVTLGV 281
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 19.4 bits (38), Expect = 5.9
Identities = 7/29 (24%), Positives = 15/29 (51%)
Frame = -1
Query: 219 LPLLHCHYRCLGHSATSQVI*ELINCRYH 133
+PLL ++ C+ S V+ ++ +H
Sbjct: 254 IPLLGSYFNCIMFMVASSVVLTVLVLIFH 282
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 19.4 bits (38), Expect = 5.9
Identities = 7/29 (24%), Positives = 15/29 (51%)
Frame = -1
Query: 219 LPLLHCHYRCLGHSATSQVI*ELINCRYH 133
+PLL ++ C+ S V+ ++ +H
Sbjct: 254 IPLLGSYFNCIMFMVASSVVLTVLVLIFH 282
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 19.4 bits (38), Expect = 5.9
Identities = 7/29 (24%), Positives = 15/29 (51%)
Frame = -1
Query: 219 LPLLHCHYRCLGHSATSQVI*ELINCRYH 133
+PLL ++ C+ S V+ ++ +H
Sbjct: 254 IPLLGSYFNCIMFMVASSVVLTVLVLIFH 282
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 19.4 bits (38), Expect = 5.9
Identities = 6/29 (20%), Positives = 15/29 (51%)
Frame = -1
Query: 219 LPLLHCHYRCLGHSATSQVI*ELINCRYH 133
+PL+ ++ C+ S V+ ++ +H
Sbjct: 322 VPLIGSYFNCIMFMVASSVVLTVLVLNFH 350
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,661
Number of Sequences: 438
Number of extensions: 625
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used: 3659655
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)
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