Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_J22
(283 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 91 3e-20
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 86 8e-19
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 82 1e-17
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 29 0.13
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 28 0.29
SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 25 2.1
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc... 25 2.1
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||... 23 8.3
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi... 23 8.3
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c... 23 8.3
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch... 23 8.3
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 91.1 bits (216), Expect = 3e-20
Identities = 40/65 (61%), Positives = 57/65 (87%)
Frame = +1
Query: 52 MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRG 231
M+Y+AAYLL +GGK SP+A+D+E +LS+VGIEA++E+++ +ISELNGKN+EELI AG
Sbjct: 1 MKYLAAYLLLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNE 60
Query: 232 KLSSM 246
KLS++
Sbjct: 61 KLSTV 65
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 86.2 bits (204), Expect = 8e-19
Identities = 37/65 (56%), Positives = 57/65 (87%)
Frame = +1
Query: 52 MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRG 231
M+Y+AAYLL +GGK SP+A+D+E +LS+VGIEA+SE+++ +I+ELNGK+++ELI AG
Sbjct: 1 MKYLAAYLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNE 60
Query: 232 KLSSM 246
KL+++
Sbjct: 61 KLATV 65
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 82.2 bits (194), Expect = 1e-17
Identities = 35/65 (53%), Positives = 56/65 (86%)
Frame = +1
Query: 52 MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRG 231
M+Y+AAYLL +GGK SP+A+D+E +LS+VGIE++SE+++ +I EL+GK+++ELI AG
Sbjct: 1 MKYLAAYLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNE 60
Query: 232 KLSSM 246
KL+++
Sbjct: 61 KLATV 65
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 29.1 bits (62), Expect = 0.13
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 121 EKILSSVGIEADSEKLKKVISELNGKNVEELI 216
E +L S G+E S+ KV S +N K+VEE I
Sbjct: 297 ELVLLSEGVEMYSDDWAKVASHVNTKSVEECI 328
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 27.9 bits (59), Expect = 0.29
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 118 VEKILSSVGIEADSEKLKKVISELNG 195
V++I VG+E DSE K + E+ G
Sbjct: 1742 VDEIFGEVGVEKDSEDYKSNVKEIKG 1767
>SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 526
Score = 25.0 bits (52), Expect = 2.1
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +1
Query: 100 SPAAADVEKILS--SVGIEADSEKLKKVISELNGKNVEELIEAGRGKLS 240
SP++ + ++ + G DSEK+K + + K+ ++ E GK S
Sbjct: 444 SPSSKPISTLIQEKNFGTIGDSEKIKACVESVLSKHSKQFEELKNGKTS 492
>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 25.0 bits (52), Expect = 2.1
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 115 DVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSS 243
DV++ LS + EA + NG+ +EE++ A KL +
Sbjct: 56 DVDQ-LSEIAAEAGVHAMPSFFLYKNGEKIEEIVGANPAKLEA 97
>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 23.0 bits (47), Expect = 8.3
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -1
Query: 277 PQRARRRHPPAWKRACRVRPQL 212
P AR P WK C+VR ++
Sbjct: 148 PDCARTYTPHIWKAVCQVRQKV 169
>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 23.0 bits (47), Expect = 8.3
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +1
Query: 94 KASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGR 228
KAS A A + VGI+ DS K + + EE +E R
Sbjct: 274 KASGAVAIRNPYIRVVGIQMDSNDGSKSTPLFSEEEEEEFLEISR 318
>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 708
Score = 23.0 bits (47), Expect = 8.3
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -3
Query: 245 MEESLPRPASINSSTFL 195
+ E+ P P+S+NSST L
Sbjct: 183 VSEAAPPPSSLNSSTVL 199
>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 23.0 bits (47), Expect = 8.3
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 4/37 (10%)
Frame = +1
Query: 121 EKILSSV---GIEADSEKL-KKVISELNGKNVEELIE 219
E+++S+V +E+ KL KK+I E+N KN + + E
Sbjct: 615 ERLMSTVELLSLESGENKLIKKLIIEINQKNYDFIDE 651
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 966,805
Number of Sequences: 5004
Number of extensions: 14334
Number of successful extensions: 46
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 63619130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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