Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_J20
         (381 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.12c |||sedlin family protein|Schizosaccharomyces pombe...    27   0.75 
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    26   1.7  
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom...    26   2.3  
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    25   5.3  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    24   7.0  
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom...    24   7.0  

>SPAC15A10.12c |||sedlin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 117

 Score = 27.5 bits (58), Expect = 0.75
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 226 DLYLGLLYATDTHKIYGYVANTRIKLVLVTSS 321
           D +LGLL   +    Y + +NT++K +L   +
Sbjct: 59  DCFLGLLGVEEDISTYAFYSNTKVKFILAVKA 90


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 165 KSLFEGV*CSVDEPLARKLVVS 100
           ++LF  + C+V+ PLA K +VS
Sbjct: 92  RTLFRSLSCTVETPLANKTIVS 113


>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 64  PLYIGGVGNDTSTDNELSRQWLVHTALDAL 153
           P+ + G  +DT T N  SR  L   ALDAL
Sbjct: 213 PVLLDGSEDDTLTSNWHSRVILFQNALDAL 242


>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 198 FERYAH*STRPLFRSVVRYGYP*NLWLRSEHKNQTCA 308
           F R +     PL  ++  YG P +   ++ HK+ +CA
Sbjct: 439 FHRLSRQQPTPLIGAIADYGNPESCIGKAAHKSVSCA 475


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 239 VCCTLRIPIKFMVT*RT 289
           +CCT+ IPI  + T +T
Sbjct: 114 ICCTILIPINIVATNKT 130


>SPAC3C7.09 |set8||lysine methyltransferase Set8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 429

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 194 DPVLLLLVDASRSSRASNAVWT 129
           DPVL  ++D    S  SNA W+
Sbjct: 186 DPVLAPVIDLCNHSSKSNAKWS 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,453,483
Number of Sequences: 5004
Number of extensions: 24900
Number of successful extensions: 47
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)