Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_J20
(381 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0129 - 21028528-21028575,21029559-21029654,21029989-210300... 60 6e-10
04_04_0426 + 25125590-25125670,25126171-25126256,25126423-251264... 31 0.23
01_03_0165 + 13356499-13356834,13356840-13357046,13357206-13357544 29 0.94
12_01_0479 - 3759699-3759865,3760487-3760586,3761031-3761360 29 1.6
06_03_0389 - 20273637-20274383,20274488-20274979 27 3.8
06_03_0387 - 20244279-20245025,20245130-20245621 27 3.8
04_04_0074 - 22537559-22537951,22539143-22539271,22540410-225405... 27 5.0
04_01_0051 - 542615-544066 27 6.6
03_02_0095 + 5593353-5593638,5593739-5594130,5594316-5594816 27 6.6
06_03_1080 + 27436389-27436742,27437573-27437804,27437911-274381... 26 8.7
01_07_0154 - 41532220-41533252,41533786-41533971,41534759-415350... 26 8.7
>09_06_0129 -
21028528-21028575,21029559-21029654,21029989-21030070,
21030394-21030472,21030946-21031042,21031506-21031593,
21033326-21033687
Length = 283
Score = 60.1 bits (139), Expect = 6e-10
Identities = 36/119 (30%), Positives = 63/119 (52%)
Frame = +1
Query: 22 KMAVCVAVIGKDNSPLYIGGVGNDTSTDNELSRQWLVHTALDALEERLAXXXXXXXXXXX 201
+M +C +V N+PLY+ T D+ L +VH +LD ++ER+
Sbjct: 143 RMIICESV----NNPLYLQSF---TEADDALKLHHVVHCSLDVIDERVNNPKRNAPA--- 192
Query: 202 XXXXXDLRDLYLGLLYATDTHKIYGYVANTRIKLVLVTSSTSPSGSNIRDAEVRTALRR 378
L + +LGLLY T+ +K+YGY+ NT++K ++VT+ +++DA+ R R+
Sbjct: 193 ------LNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDL-----DVKDADARNFFRK 240
>04_04_0426 +
25125590-25125670,25126171-25126256,25126423-25126471,
25126547-25126675,25126973-25127055,25127791-25127959,
25128038-25128103
Length = 220
Score = 31.5 bits (68), Expect = 0.23
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 34 CVAVIGKDNSPLYIGGVGN-DTSTDNELSRQWLVHTALDALEE 159
C A++ K++ P+Y VG+ D Q+++H ALD +++
Sbjct: 6 CFAIVSKNDIPIYEAEVGSAPKKEDLAYQHQFILHAALDVVQD 48
>01_03_0165 + 13356499-13356834,13356840-13357046,13357206-13357544
Length = 293
Score = 29.5 bits (63), Expect = 0.94
Identities = 19/64 (29%), Positives = 33/64 (51%)
Frame = +2
Query: 86 AMIRALTTSFRASGSSTLH*TPSKSDLHQLTATTRDPIRTLRALIYETFI*VCCTLRIPI 265
++I++ TT A + TP+ ++L Q+ ++ AL T + C TLRI I
Sbjct: 208 SLIKSATTQRSARPMGSSSGTPTMANLDQIHYLVGGSAFSIDALESPTLLVRCKTLRIAI 267
Query: 266 KFMV 277
+FM+
Sbjct: 268 QFML 271
>12_01_0479 - 3759699-3759865,3760487-3760586,3761031-3761360
Length = 198
Score = 28.7 bits (61), Expect = 1.6
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -3
Query: 196 WIPCCCC*LMQVALRG-RLMQCGRATGAKARC 104
W+P CC + R R+M+ ATG + RC
Sbjct: 34 WLPLLCCAVAVFRFRRVRMMRSSAATGGRRRC 65
>06_03_0389 - 20273637-20274383,20274488-20274979
Length = 412
Score = 27.5 bits (58), Expect = 3.8
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = -3
Query: 229 GLVDQCA*RSNWIPCCCC*LMQVALRGRLMQCGRATGAKARCQCSYHCQ 83
G D +SNWI ++++ +G+L G A +K C Y C+
Sbjct: 112 GSTDLALFKSNWIEIMRLESLEISGKGKLDGQGAAVWSKNSCAKKYDCK 160
>06_03_0387 - 20244279-20245025,20245130-20245621
Length = 412
Score = 27.5 bits (58), Expect = 3.8
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = -3
Query: 229 GLVDQCA*RSNWIPCCCC*LMQVALRGRLMQCGRATGAKARCQCSYHCQ 83
G D +SNWI ++++ +G+L G A +K C Y C+
Sbjct: 112 GSTDLALFKSNWIEIMRLESLEISGKGKLDGQGAAVWSKNSCAKKYDCK 160
>04_04_0074 -
22537559-22537951,22539143-22539271,22540410-22540541,
22540546-22540996,22541301-22541443
Length = 415
Score = 27.1 bits (57), Expect = 5.0
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 119 ASGSSTLH*TPSKSDLHQLTATTRDPIRTLRALI 220
ASG++ KSD QLT + DPI T +I
Sbjct: 57 ASGNAVKSEQLGKSDERQLTPSPNDPIHTTNGII 90
>04_01_0051 - 542615-544066
Length = 483
Score = 26.6 bits (56), Expect = 6.6
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 122 SGSSTLH*TPSKSDLHQLTATTRDPIRTLRALIYET 229
+GS+ LH TP+ S TA P+ R L Y+T
Sbjct: 69 NGSTILHLTPAASSNKSGTALLPTPVTLWRRLDYQT 104
>03_02_0095 + 5593353-5593638,5593739-5594130,5594316-5594816
Length = 392
Score = 26.6 bits (56), Expect = 6.6
Identities = 6/7 (85%), Positives = 7/7 (100%)
Frame = -3
Query: 196 WIPCCCC 176
W+PCCCC
Sbjct: 7 WLPCCCC 13
>06_03_1080 +
27436389-27436742,27437573-27437804,27437911-27438159,
27438467-27438517,27438676-27438936,27439019-27439071,
27439201-27439315,27441666-27441920,27442423-27443480
Length = 875
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 231 LFRSVVRYGYP*NLWLRSEHKNQ 299
LFR +VRYGY W +NQ
Sbjct: 692 LFRCIVRYGYKEGRWDHFNFENQ 714
>01_07_0154 -
41532220-41533252,41533786-41533971,41534759-41535039,
41535184-41535318,41535427-41535573,41535841-41536010,
41536110-41536197,41536999-41537219,41537725-41537810,
41537916-41537962
Length = 797
Score = 26.2 bits (55), Expect = 8.7
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +2
Query: 248 TLRIPIKFMVT*RTQESNLCL*RV-RHRRAVVIS-GTLK 358
TL + + + + +ESNLCL R R RR VIS G+LK
Sbjct: 68 TLSVAVSQLASDFDRESNLCLERFSRTRRTPVISTGSLK 106
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,592,179
Number of Sequences: 37544
Number of extensions: 169011
Number of successful extensions: 409
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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