Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_J20
(381 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC105809-1|AAI05810.1| 140|Homo sapiens trafficking protein par... 96 3e-20
BC018024-1|AAH18024.1| 139|Homo sapiens trafficking protein par... 96 3e-20
BC011369-1|AAH11369.1| 139|Homo sapiens trafficking protein par... 96 3e-20
AK126779-1|BAC86686.1| 177|Homo sapiens protein ( Homo sapiens ... 96 3e-20
AF089106-1|AAF00568.1| 140|Homo sapiens unknown protein. 96 3e-20
U70136-1|AAB09089.1| 1404|Homo sapiens megakaryocyte stimulating... 29 3.8
AY653037-1|AAT74745.1| 162|Homo sapiens proteoglycan 4 protein. 29 3.8
AL133553-1|CAC36090.1| 1404|Homo sapiens proteoglycan 4 protein. 29 3.8
>BC105809-1|AAI05810.1| 140|Homo sapiens trafficking protein
particle complex 2-like protein.
Length = 140
Score = 96.3 bits (229), Expect = 3e-20
Identities = 51/119 (42%), Positives = 75/119 (63%)
Frame = +1
Query: 25 MAVCVAVIGKDNSPLYIGGVGNDTSTDNELSRQWLVHTALDALEERLAXXXXXXXXXXXX 204
MAVC+AVI K+N PLYI T T+NEL ++VHT+LD ++E+++
Sbjct: 1 MAVCIAVIAKENYPLYI----RSTPTENELKFHYMVHTSLDVVDEKISAMGKALV----- 51
Query: 205 XXXXDLRDLYLGLLYATDTHKIYGYVANTRIKLVLVTSSTSPSGSNIRDAEVRTALRRL 381
D R+LYLGLLY T+ +K+YGYV N+++K V+V S S + +RD E+R+ R+L
Sbjct: 52 ----DQRELYLGLLYPTEDYKVYGYVTNSKVKFVMVVDS---SNTALRDNEIRSMFRKL 103
>BC018024-1|AAH18024.1| 139|Homo sapiens trafficking protein
particle complex 2-like protein.
Length = 139
Score = 96.3 bits (229), Expect = 3e-20
Identities = 51/119 (42%), Positives = 75/119 (63%)
Frame = +1
Query: 25 MAVCVAVIGKDNSPLYIGGVGNDTSTDNELSRQWLVHTALDALEERLAXXXXXXXXXXXX 204
MAVC+AVI K+N PLYI T T+NEL ++VHT+LD ++E+++
Sbjct: 1 MAVCIAVIAKENYPLYI----RSTPTENELKFHYMVHTSLDVVDEKISAMGKALV----- 51
Query: 205 XXXXDLRDLYLGLLYATDTHKIYGYVANTRIKLVLVTSSTSPSGSNIRDAEVRTALRRL 381
D R+LYLGLLY T+ +K+YGYV N+++K V+V S S + +RD E+R+ R+L
Sbjct: 52 ----DQRELYLGLLYPTEDYKVYGYVTNSKVKFVMVVDS---SNTALRDNEIRSMFRKL 103
>BC011369-1|AAH11369.1| 139|Homo sapiens trafficking protein
particle complex 2-like protein.
Length = 139
Score = 96.3 bits (229), Expect = 3e-20
Identities = 51/119 (42%), Positives = 75/119 (63%)
Frame = +1
Query: 25 MAVCVAVIGKDNSPLYIGGVGNDTSTDNELSRQWLVHTALDALEERLAXXXXXXXXXXXX 204
MAVC+AVI K+N PLYI T T+NEL ++VHT+LD ++E+++
Sbjct: 1 MAVCIAVIAKENYPLYI----RSTPTENELKFHYMVHTSLDVVDEKISAMGKALV----- 51
Query: 205 XXXXDLRDLYLGLLYATDTHKIYGYVANTRIKLVLVTSSTSPSGSNIRDAEVRTALRRL 381
D R+LYLGLLY T+ +K+YGYV N+++K V+V S S + +RD E+R+ R+L
Sbjct: 52 ----DQRELYLGLLYPTEDYKVYGYVTNSKVKFVMVVDS---SNTALRDNEIRSMFRKL 103
>AK126779-1|BAC86686.1| 177|Homo sapiens protein ( Homo sapiens
cDNA FLJ44827 fis, clone BRACE3046837. ).
Length = 177
Score = 96.3 bits (229), Expect = 3e-20
Identities = 51/119 (42%), Positives = 75/119 (63%)
Frame = +1
Query: 25 MAVCVAVIGKDNSPLYIGGVGNDTSTDNELSRQWLVHTALDALEERLAXXXXXXXXXXXX 204
MAVC+AVI K+N PLYI T T+NEL ++VHT+LD ++E+++
Sbjct: 1 MAVCIAVIAKENYPLYI----RSTPTENELKFHYMVHTSLDVVDEKISAMGKALV----- 51
Query: 205 XXXXDLRDLYLGLLYATDTHKIYGYVANTRIKLVLVTSSTSPSGSNIRDAEVRTALRRL 381
D R+LYLGLLY T+ +K+YGYV N+++K V+V S S + +RD E+R+ R+L
Sbjct: 52 ----DQRELYLGLLYPTEDYKVYGYVTNSKVKFVMVVDS---SNTALRDNEIRSMFRKL 103
>AF089106-1|AAF00568.1| 140|Homo sapiens unknown protein.
Length = 140
Score = 96.3 bits (229), Expect = 3e-20
Identities = 51/119 (42%), Positives = 75/119 (63%)
Frame = +1
Query: 25 MAVCVAVIGKDNSPLYIGGVGNDTSTDNELSRQWLVHTALDALEERLAXXXXXXXXXXXX 204
MAVC+AVI K+N PLYI T T+NEL ++VHT+LD ++E+++
Sbjct: 1 MAVCIAVIAKENYPLYI----RSTPTENELKFHYMVHTSLDVVDEKISAMGKALV----- 51
Query: 205 XXXXDLRDLYLGLLYATDTHKIYGYVANTRIKLVLVTSSTSPSGSNIRDAEVRTALRRL 381
D R+LYLGLLY T+ +K+YGYV N+++K V+V S S + +RD E+R+ R+L
Sbjct: 52 ----DQRELYLGLLYPTEDYKVYGYVTNSKVKFVMVVDS---SNTALRDNEIRSMFRKL 103
>U70136-1|AAB09089.1| 1404|Homo sapiens megakaryocyte stimulating
factor protein.
Length = 1404
Score = 29.5 bits (63), Expect = 3.8
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -3
Query: 139 QCGRATGAKARCQCSYHCQH 80
+CG A C C Y+CQH
Sbjct: 33 RCGEGYSRDATCNCDYNCQH 52
>AY653037-1|AAT74745.1| 162|Homo sapiens proteoglycan 4 protein.
Length = 162
Score = 29.5 bits (63), Expect = 3.8
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -3
Query: 139 QCGRATGAKARCQCSYHCQH 80
+CG A C C Y+CQH
Sbjct: 2 RCGEGYSRDATCNCDYNCQH 21
>AL133553-1|CAC36090.1| 1404|Homo sapiens proteoglycan 4 protein.
Length = 1404
Score = 29.5 bits (63), Expect = 3.8
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -3
Query: 139 QCGRATGAKARCQCSYHCQH 80
+CG A C C Y+CQH
Sbjct: 33 RCGEGYSRDATCNCDYNCQH 52
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,643,573
Number of Sequences: 237096
Number of extensions: 913934
Number of successful extensions: 1949
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1939
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2526356360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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