Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_J20
         (381 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF272397-1|AAF76229.1|  237|Caenorhabditis elegans CEH-17 protein.     32   0.16 
AF003151-5|AAK18908.1|  237|Caenorhabditis elegans C.elegans hom...    32   0.16 
U89245-1|AAB49459.1|  612|Caenorhabditis elegans transcription f...    28   2.0  
AF003141-10|AAK21487.1|  612|Caenorhabditis elegans Uncoordinate...    28   2.0  
AF001272-1|AAB84235.1|  612|Caenorhabditis elegans enhancer of s...    28   2.0  
AF001271-1|AAB84234.1|  612|Caenorhabditis elegans enhancer of s...    28   2.0  
AF016675-5|AAB66134.1|  476|Caenorhabditis elegans Hypothetical ...    27   3.4  
U13646-6|AAC24421.2| 1376|Caenorhabditis elegans Flectin protein...    27   6.0  

>AF272397-1|AAF76229.1|  237|Caenorhabditis elegans CEH-17 protein.
          Length = 237

 Score = 31.9 bits (69), Expect = 0.16
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = +2

Query: 47  SAKIIHRYTSAVLAMIRALTTSFRASGSSTLH*TPSKSDLHQLTATTRDPIR 202
           S  I H+Y +  L   RALTT+   S SS  + T S S       TT D ++
Sbjct: 39  SHNIYHQYATPYLQSGRALTTAHNTSSSSAGNSTSSSSSSSNYRNTTHDSLQ 90


>AF003151-5|AAK18908.1|  237|Caenorhabditis elegans C.elegans
           homeobox protein 17 protein.
          Length = 237

 Score = 31.9 bits (69), Expect = 0.16
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = +2

Query: 47  SAKIIHRYTSAVLAMIRALTTSFRASGSSTLH*TPSKSDLHQLTATTRDPIR 202
           S  I H+Y +  L   RALTT+   S SS  + T S S       TT D ++
Sbjct: 39  SHNIYHQYATPYLQSGRALTTAHNTSSSSAGNSTSSSSSSSNYRNTTHDSLQ 90


>U89245-1|AAB49459.1|  612|Caenorhabditis elegans transcription
           factor UNC-37 protein.
          Length = 612

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 31  VCVAVIGKDNSPLYIGGVG 87
           VC A I +DNS +Y GG G
Sbjct: 325 VCAATISRDNSRVYTGGKG 343


>AF003141-10|AAK21487.1|  612|Caenorhabditis elegans Uncoordinated
           protein 37 protein.
          Length = 612

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 31  VCVAVIGKDNSPLYIGGVG 87
           VC A I +DNS +Y GG G
Sbjct: 325 VCAATISRDNSRVYTGGKG 343


>AF001272-1|AAB84235.1|  612|Caenorhabditis elegans enhancer of
           split groucho protein.
          Length = 612

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 31  VCVAVIGKDNSPLYIGGVG 87
           VC A I +DNS +Y GG G
Sbjct: 325 VCAATISRDNSRVYTGGKG 343


>AF001271-1|AAB84234.1|  612|Caenorhabditis elegans enhancer of
           split groucho protein.
          Length = 612

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 31  VCVAVIGKDNSPLYIGGVG 87
           VC A I +DNS +Y GG G
Sbjct: 325 VCAATISRDNSRVYTGGKG 343


>AF016675-5|AAB66134.1|  476|Caenorhabditis elegans Hypothetical
           protein T27B7.2 protein.
          Length = 476

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 139 QCGRATGAKARCQCSYHCQHRRCI 68
           +C   TG KARC C   C+ RRC+
Sbjct: 80  KCQSKTGNKARCFCR-PCRLRRCL 102


>U13646-6|AAC24421.2| 1376|Caenorhabditis elegans Flectin protein 1
            protein.
          Length = 1376

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -3

Query: 154  RGRLMQCGRATGAKARCQ-CSYHCQHRRC 71
            R   M C R TG   +CQ C+YH  H+ C
Sbjct: 1139 RPMCMFCSRETGNLHQCQRCAYHV-HQEC 1166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,087,638
Number of Sequences: 27780
Number of extensions: 145456
Number of successful extensions: 334
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)