Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_J19
(347 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 135 2e-33
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 128 2e-31
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 75 4e-15
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 66 1e-12
SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po... 31 0.068
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 29 0.21
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.27
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc... 27 1.1
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 26 1.9
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 25 2.5
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 25 3.4
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 25 3.4
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ... 24 5.9
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ... 24 5.9
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 24 5.9
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 24 5.9
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 24 7.8
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 24 7.8
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 135 bits (327), Expect = 2e-33
Identities = 59/86 (68%), Positives = 68/86 (79%)
Frame = +3
Query: 90 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 269
MRE IS+HVGQAG QIGNACWELYCLEHGIQP+G M + D F+TFFSETG GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 270 DVPRAVFVDLEPTVVDEVRTGTYRQL 347
VPR+++VDLEP V+D+VRTG YR L
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDL 86
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 128 bits (309), Expect = 2e-31
Identities = 62/91 (68%), Positives = 70/91 (76%), Gaps = 5/91 (5%)
Frame = +3
Query: 90 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD-----KTIGGGDDSFNTFFSE 254
MRE ISVHVGQAGVQIGNACWELYCLEHGI PDG PT+ K +D F TFFSE
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59
Query: 255 TGAGKDVPRAVFVDLEPTVVDEVRTGTYRQL 347
TG GK VPR+++VDLEP V+D+VRTG Y+ L
Sbjct: 60 TGQGKFVPRSIYVDLEPNVIDQVRTGPYKDL 90
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 74.5 bits (175), Expect = 4e-15
Identities = 36/85 (42%), Positives = 52/85 (61%)
Frame = +3
Query: 93 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKD 272
RE I++ GQ G QIG+ W+ CLEHGI PDG + + T G D + FF ++ +
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRY 60
Query: 273 VPRAVFVDLEPTVVDEVRTGTYRQL 347
+PRA+ +DLEP VV+ + + TY L
Sbjct: 61 IPRAILIDLEPRVVNNILSDTYGSL 85
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 66.5 bits (155), Expect = 1e-12
Identities = 34/86 (39%), Positives = 45/86 (52%)
Frame = +3
Query: 90 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 269
MRE + + GQ G Q+G A W EHG+ G T + N +F+E GK
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGK 58
Query: 270 DVPRAVFVDLEPTVVDEVRTGTYRQL 347
VPRAV VDLEP +D V++G + L
Sbjct: 59 YVPRAVLVDLEPGTMDAVKSGKFGNL 84
>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 351
Score = 30.7 bits (66), Expect = 0.068
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 9/91 (9%)
Frame = +1
Query: 100 ASLYTLAKPESRSEMPAGSCIALSTASNLMVR-CQLTRPSGVETT---PSTRSSARPEL- 264
A+ Y + E + ++ G I TA N + + R G + P+T+S A+ +
Sbjct: 57 AAYYVVRDAEKKGKLSRGGTIVEGTAGNTGIGLAHIARARGYKCVIYMPNTQSQAKIDTL 116
Query: 265 ----ARTFPVPSSSILNPL*LTRSALAHTDS 345
A PVP + NPL A H +S
Sbjct: 117 KFLGAEVHPVPVAPFSNPLNYNHQARRHAES 147
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 29.1 bits (62), Expect = 0.21
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = +1
Query: 130 SRSEMPAGSCIALSTASNLM--VRCQLTRPSGVET-TPSTRSSARPELARTFPVPSSSIL 300
SRS P + ++S A+ Q+T P+ V + TP T SS L + P+ SSSIL
Sbjct: 346 SRSSKPTDTTNSISFANTTPENTSTQITSPTAVNSSTPITSSSV---LNSSTPITSSSIL 402
Query: 301 N 303
N
Sbjct: 403 N 403
Score = 25.4 bits (53), Expect = 2.5
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +1
Query: 82 NTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARP 258
+T S+S+ + P + S + S ++++S L +T + V + TP T S+A
Sbjct: 1221 STPITSSSVLNSSTPITSSSI-LNSSTPITSSSVLNSSTPITSSTVVNSSTPITSSTA-- 1277
Query: 259 ELARTFPVPSSSILN 303
L + P+ SSS+LN
Sbjct: 1278 -LNTSIPITSSSVLN 1291
Score = 23.8 bits (49), Expect = 7.8
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +1
Query: 82 NTKCVSASLYTLAKP-ESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSAR 255
+T S+S+ + P S S + + + I ST N +T + V + TP T S+A
Sbjct: 1989 STPITSSSVLNTSTPITSSSVLNSSTPITSSTVVNTST--PITSSTVVNSSTPITSSTA- 2045
Query: 256 PELARTFPVPSSSILN 303
L + P+ SSS+LN
Sbjct: 2046 --LNTSTPITSSSVLN 2059
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.7 bits (61), Expect = 0.27
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +1
Query: 130 SRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSARPELARTFPVPSSSILN 303
S S + + + ST S+L ++PS T+ ST SSA P + + SSS+++
Sbjct: 160 SSSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVS 217
>SPBC19G7.06 |mbx1||MADS-box transcription factor
Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 26.6 bits (56), Expect = 1.1
Identities = 20/82 (24%), Positives = 36/82 (43%)
Frame = +1
Query: 73 KKLNTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSA 252
K LN V+ +A + S P+ +C + + + N + + TTP+T S
Sbjct: 82 KFLNKDFVTVDPLRIASVTTYSAQPSNNCSSATDSENDFQSFTIKSSTTYHTTPTTASEN 141
Query: 253 RPELARTFPVPSSSILNPL*LT 318
+ + T P +S+ N L L+
Sbjct: 142 KKIESITIP-DHASVYNDLPLS 162
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 25.8 bits (54), Expect = 1.9
Identities = 14/62 (22%), Positives = 30/62 (48%)
Frame = +1
Query: 109 YTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSARPELARTFPVPS 288
++ A+ + S+ + S + Q +PSGVE T ++R++A+ + T + S
Sbjct: 12 FSYARALASSQSNKSNSTKASENNTATAEKQAVKPSGVEPTNTSRANAQKKTESTGKITS 71
Query: 289 SS 294
+
Sbjct: 72 EA 73
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 25.4 bits (53), Expect = 2.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 211 PSGVETTPSTRSSARPELARTFPV 282
P+ VETTPST +SA + F +
Sbjct: 350 PANVETTPSTATSAPKKSTAPFAI 373
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 25.0 bits (52), Expect = 3.4
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -3
Query: 219 PRWSCQLASDHQVGCRAQGNTAPSRHFRSGLR 124
P SC+L S+H+ C + N++ S + + R
Sbjct: 110 PHLSCELPSEHREKCLKRRNSSLSSNLHANKR 141
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 25.0 bits (52), Expect = 3.4
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -1
Query: 248 EERVEGVVSTPDGLVSWHLTIRLDAVLKAIQLPAGISDLDSGL 120
EE EG TP +T+R D+V++ + AG++D+ S L
Sbjct: 320 EEISEGEEYTPIEESKEPITVRRDSVIQIDESSAGLTDVISEL 362
>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 868
Score = 24.2 bits (50), Expect = 5.9
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +1
Query: 79 LNTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSA 252
LNT C+ + + + +E A S I+ TA NL+ C L+ P +P+ +++A
Sbjct: 132 LNTFCLGKTAPSDKNRYTTTECLACSKISNETAENLLFLC-LSSPWIFRASPTLQNTA 188
>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 24.2 bits (50), Expect = 5.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 235 STRSSARPELARTFPVPSSSILN 303
S +S A+PEL RT SSS ++
Sbjct: 111 SAKSKAKPELLRTLTSKSSSAVD 133
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 24.2 bits (50), Expect = 5.9
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = -1
Query: 248 EERVEGVVSTPDGLVSWHLTIRLDAVLKAIQLPAGISDLDSGLANVY 108
E+ V GVV + + W L++ LD + + G+ D+ L ++
Sbjct: 399 EDSVIGVVGADNQISLWDLSVELDEEEQDSRAAEGLQDVPPQLMFIH 445
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 24.2 bits (50), Expect = 5.9
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = +1
Query: 124 PESRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSARPELARTFPVPS 288
P S S + LST+S ++ T SG PST SS + P+ S
Sbjct: 483 PISSSSSASSPQSTLSTSSEVVSEVSSTLLSGSSAIPSTSSSTPSSSIISSPMTS 537
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 23.8 bits (49), Expect = 7.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 179 DAVLKAIQLPAGISDLDSGLANV 111
+AVLK I GI + D+GLA +
Sbjct: 55 EAVLKRINDTVGIKESDTGLAPI 77
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 23.8 bits (49), Expect = 7.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2
Query: 280 RGTSLPAPVSLKNVLKESSPPP 215
RG ++P P S+ + S PPP
Sbjct: 43 RGLTIPPPPSVDHSAPPSGPPP 64
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,499,049
Number of Sequences: 5004
Number of extensions: 30489
Number of successful extensions: 119
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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