Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_J18
(354 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 79 3e-16
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 60 7e-11
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 56 2e-09
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 52 2e-08
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 40 8e-05
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 37 8e-04
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 36 0.002
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 36 0.002
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 34 0.006
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 34 0.007
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 33 0.010
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 33 0.013
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 33 0.017
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 32 0.023
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 30 0.091
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 30 0.091
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 30 0.12
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 29 0.28
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 28 0.37
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 28 0.37
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 27 0.64
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 0.85
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 25 3.4
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar... 25 4.5
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 24 7.9
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 78.6 bits (185), Expect = 3e-16
Identities = 33/54 (61%), Positives = 45/54 (83%)
Frame = +1
Query: 10 SEDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 171
+EDY+HRIGRTGR+ AKGT+Y +FT N++QA++LVS+L EA Q I P+L+ MA
Sbjct: 450 TEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQARELVSILSEAKQDIDPKLEEMA 503
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 60.5 bits (140), Expect = 7e-11
Identities = 26/45 (57%), Positives = 34/45 (75%)
Frame = +1
Query: 13 EDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQII 147
EDY+HRIGRTGR+ KGT+ FFTP + A +LV+VL++A Q I
Sbjct: 498 EDYVHRIGRTGRANTKGTAITFFTPQDKSHAGELVNVLRQAKQDI 542
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 56.0 bits (129), Expect = 2e-09
Identities = 27/53 (50%), Positives = 36/53 (67%)
Frame = +1
Query: 13 EDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 171
+DY+HRIGRTGR+ G + AFF +N AK+L+ +LQEANQ L +MA
Sbjct: 512 DDYVHRIGRTGRAGNTGQAVAFFNRNNKGIAKELIELLQEANQECPSFLIAMA 564
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 52.4 bits (120), Expect = 2e-08
Identities = 21/53 (39%), Positives = 33/53 (62%)
Frame = +1
Query: 13 EDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 171
EDY+HR+GRTGR+ G + F TP + A D+ L+ + Q + +LQ++A
Sbjct: 750 EDYVHRVGRTGRAGHTGVAVTFITPEQEKYAVDIAKALKMSKQPVPKELQTLA 802
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 40.3 bits (90), Expect = 8e-05
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +1
Query: 1 ARGSEDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEA 135
A+ EDY HRIGRTGR+ GT+ F P ++ DL +L +
Sbjct: 594 AKSIEDYTHRIGRTGRAGKSGTAITFLGPEDTDVYYDLRVLLSRS 638
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 37.1 bits (82), Expect = 8e-04
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +1
Query: 19 YIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEA 135
YIHRIGRTGR+ G + FFT + K + V++ +
Sbjct: 372 YIHRIGRTGRAGNTGQAVTFFTKEDGEYIKLIAGVMRSS 410
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 35.9 bits (79), Expect = 0.002
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +1
Query: 13 EDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDL 114
E+YIHRIGR+GR KG + F T + R +D+
Sbjct: 342 ENYIHRIGRSGRFGRKGVAINFVTNEDVRILRDI 375
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 35.5 bits (78), Expect = 0.002
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +1
Query: 13 EDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDL 114
E+YIHRIGR GR KG S F T + R +++
Sbjct: 340 ENYIHRIGRGGRFGRKGVSINFVTNDDVRMMREI 373
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 34.3 bits (75), Expect = 0.006
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +1
Query: 10 SEDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISP 153
++DY+HRIGRT R+ G + F P S L S + AN + P
Sbjct: 527 TDDYLHRIGRTARAGHNGAAIMFLLPKESEYINLLKSSV-SANILEQP 573
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 33.9 bits (74), Expect = 0.007
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +1
Query: 10 SEDYIHRIGRTGRSKAKGTSY 72
++DYIHRIGRTGR+ G +Y
Sbjct: 374 TDDYIHRIGRTGRAGKTGEAY 394
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 33.5 bits (73), Expect = 0.010
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 10 SEDYIHRIGRTGRSKAKGTSYAFFTPSN 93
++ YIHRIGRT R+ GT+ +F P +
Sbjct: 407 TKSYIHRIGRTARAGKPGTAMSFVVPKS 434
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 33.1 bits (72), Expect = 0.013
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +1
Query: 16 DYIHRIGRTGR-SKAKGTSYAFFTPS 90
DYIHR+GRT R +K G S F PS
Sbjct: 419 DYIHRVGRTARGTKGTGKSLMFLAPS 444
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 32.7 bits (71), Expect = 0.017
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 13 EDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEAN 138
+ Y+HR+GR GR KG + F + Q D + E N
Sbjct: 377 DSYLHRVGRAGRFGTKGLAITFSSSEEDSQILDKIQERFEVN 418
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 32.3 bits (70), Expect = 0.023
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 4 RGSEDYIHRIGRTGRSKAKGTSYAFFT 84
R +DYIHR+GRT R+ G S + T
Sbjct: 337 RDPDDYIHRVGRTARAGRSGESISIVT 363
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 30.3 bits (65), Expect = 0.091
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +1
Query: 4 RGSEDYIHRIGRTGRSKAKGTSYAFFT 84
+ +E Y+HRIGR+GR +G + +F +
Sbjct: 360 KNAETYLHRIGRSGRFGHRGLAISFIS 386
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 30.3 bits (65), Expect = 0.091
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 13 EDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVS 120
+ YIHR+GRT R G + PS K L S
Sbjct: 367 DTYIHRVGRTARYNRSGNALLLLLPSEEAFLKRLES 402
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 29.9 bits (64), Expect = 0.12
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 10 SEDYIHRIGRTGRSKAKGTSYAFFT 84
S+ YIHR+GRT R+ G S A T
Sbjct: 366 SKAYIHRVGRTARAGRAGKSIALVT 390
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 28.7 bits (61), Expect = 0.28
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +1
Query: 19 YIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMAD 174
++HR+GRT R+ G +Y+ ++ DL L S Q+++ +D
Sbjct: 430 FVHRVGRTARAGRTGWAYSLVRAEDAGYLLDLQLFLNRPLVTSSKQVKTDSD 481
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 28.3 bits (60), Expect = 0.37
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +1
Query: 19 YIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDL 114
Y+HR GRT R+ G S P Q K L
Sbjct: 473 YVHRSGRTARANEDGVSILMCGPKELSQLKRL 504
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 28.3 bits (60), Expect = 0.37
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 13 EDYIHRIGRTGRSKAKGTSYAF 78
+ Y+HRIGRTGR G S F
Sbjct: 440 QTYLHRIGRTGRFGRVGVSINF 461
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 27.5 bits (58), Expect = 0.64
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 19 YIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQ 129
Y+HRIGRT R+ +G ++ LV L+
Sbjct: 521 YVHRIGRTARAGREGFAWTLVQSHEGHHFSKLVKQLR 557
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 27.1 bits (57), Expect = 0.85
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 10 SEDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISP 153
S+ + I K + F PSNS KDL +V ++ N++ SP
Sbjct: 249 SQQILPAISNNTSEKPDSNNCGFLLPSNSTSIKDLKNV-KKGNRLNSP 295
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 25.0 bits (52), Expect = 3.4
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 13 EDYIHRIGRTGRSKAKG 63
E Y+HR+GRT R+ G
Sbjct: 586 EVYLHRVGRTARAGRSG 602
>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 524
Score = 24.6 bits (51), Expect = 4.5
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Frame = -2
Query: 134 ASCKTETRSLAWRELDGVKNA---YEVPLAL 51
A+C ETR W+ L G+ N+ + +PL +
Sbjct: 482 AACGRETRVGRWKTLRGIPNSGFVFNIPLTV 512
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 23.8 bits (49), Expect = 7.9
Identities = 9/37 (24%), Positives = 17/37 (45%)
Frame = +1
Query: 13 EDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSV 123
+ + HR GR GR+ G + + ++L+ V
Sbjct: 341 KSFSHRCGRAGRAGRAGVAIVLLNDGREEEYEELLRV 377
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,084,632
Number of Sequences: 5004
Number of extensions: 15400
Number of successful extensions: 62
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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