Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_J17
(365 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 202 6e-53
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 202 6e-53
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 202 6e-53
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 202 6e-53
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 202 6e-53
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 202 6e-53
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 201 1e-52
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 199 4e-52
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 196 5e-51
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 184 2e-47
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 184 2e-47
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 183 4e-47
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 177 2e-45
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 163 3e-41
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 109 6e-25
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 105 7e-24
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 88 2e-18
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 63 5e-11
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 47 4e-06
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 47 4e-06
AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical... 34 0.036
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 33 0.047
U42439-7|AAA83511.1| 304|Caenorhabditis elegans Collagen protei... 30 0.58
AF188477-1|AAF01458.1| 1418|Caenorhabditis elegans phospholipase... 29 1.3
AF179426-1|AAF05701.1| 1431|Caenorhabditis elegans phospholipase... 29 1.3
AF068714-6|AAL77167.1| 1419|Caenorhabditis elegans Egg laying de... 29 1.3
AF068714-5|AAL77168.1| 1431|Caenorhabditis elegans Egg laying de... 29 1.3
AF025453-5|AAY55851.1| 279|Caenorhabditis elegans Hypothetical ... 28 2.4
Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical pr... 27 3.1
Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical pr... 27 3.1
AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein. 27 3.1
AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein. 27 3.1
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 24 3.6
Z82258-1|CAB05122.2| 906|Caenorhabditis elegans Hypothetical pr... 27 4.1
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 27 4.1
Z83225-2|CAB05722.1| 732|Caenorhabditis elegans Hypothetical pr... 27 5.4
Z81097-19|CAB03177.1| 732|Caenorhabditis elegans Hypothetical p... 27 5.4
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 26 9.5
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 26 9.5
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 26 9.5
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 26 9.5
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 26 9.5
AF025469-6|AAR12979.1| 813|Caenorhabditis elegans Hypothetical ... 26 9.5
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ... 26 9.5
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 202 bits (493), Expect = 6e-53
Identities = 90/92 (97%), Positives = 91/92 (98%)
Frame = +1
Query: 88 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 267
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 268 SKRGILRLKYPIEHGIVTNWDDMEKIWHHTFY 363
SKRGIL LKYPIEHGIVTNWDDMEKIWHHTFY
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFY 92
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 202 bits (493), Expect = 6e-53
Identities = 90/92 (97%), Positives = 91/92 (98%)
Frame = +1
Query: 88 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 267
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 268 SKRGILRLKYPIEHGIVTNWDDMEKIWHHTFY 363
SKRGIL LKYPIEHGIVTNWDDMEKIWHHTFY
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFY 92
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 202 bits (493), Expect = 6e-53
Identities = 90/92 (97%), Positives = 91/92 (98%)
Frame = +1
Query: 88 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 267
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 268 SKRGILRLKYPIEHGIVTNWDDMEKIWHHTFY 363
SKRGIL LKYPIEHGIVTNWDDMEKIWHHTFY
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFY 92
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 202 bits (493), Expect = 6e-53
Identities = 90/92 (97%), Positives = 91/92 (98%)
Frame = +1
Query: 88 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 267
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 268 SKRGILRLKYPIEHGIVTNWDDMEKIWHHTFY 363
SKRGIL LKYPIEHGIVTNWDDMEKIWHHTFY
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFY 92
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 202 bits (493), Expect = 6e-53
Identities = 90/92 (97%), Positives = 91/92 (98%)
Frame = +1
Query: 88 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 267
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 268 SKRGILRLKYPIEHGIVTNWDDMEKIWHHTFY 363
SKRGIL LKYPIEHGIVTNWDDMEKIWHHTFY
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFY 92
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 202 bits (493), Expect = 6e-53
Identities = 90/92 (97%), Positives = 91/92 (98%)
Frame = +1
Query: 88 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 267
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 268 SKRGILRLKYPIEHGIVTNWDDMEKIWHHTFY 363
SKRGIL LKYPIEHGIVTNWDDMEKIWHHTFY
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFY 92
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 201 bits (490), Expect = 1e-52
Identities = 89/92 (96%), Positives = 91/92 (98%)
Frame = +1
Query: 88 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 267
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 268 SKRGILRLKYPIEHGIVTNWDDMEKIWHHTFY 363
SKRGIL LKYPIEHGIVTNWDDMEKIWHHTFY
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFY 92
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 199 bits (486), Expect = 4e-52
Identities = 87/92 (94%), Positives = 91/92 (98%)
Frame = +1
Query: 88 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 267
MCD++VAAL++DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALILDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 268 SKRGILRLKYPIEHGIVTNWDDMEKIWHHTFY 363
SKRGIL LKYPIEHGIVTNWDDMEKIWHHTFY
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFY 92
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 196 bits (477), Expect = 5e-51
Identities = 87/90 (96%), Positives = 89/90 (98%)
Frame = +1
Query: 94 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 273
+EE+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 274 RGILRLKYPIEHGIVTNWDDMEKIWHHTFY 363
RGIL LKYPIEHGIVTNWDDMEKIWHHTFY
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFY 91
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 184 bits (448), Expect = 2e-47
Identities = 84/86 (97%), Positives = 85/86 (98%)
Frame = +1
Query: 88 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 267
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 268 SKRGILRLKYPIEHGIVTNWDDMEKI 345
SKRGIL LKYPIEHGIVTNWDDMEKI
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 184 bits (448), Expect = 2e-47
Identities = 84/86 (97%), Positives = 85/86 (98%)
Frame = +1
Query: 88 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 267
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 268 SKRGILRLKYPIEHGIVTNWDDMEKI 345
SKRGIL LKYPIEHGIVTNWDDMEKI
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 183 bits (445), Expect = 4e-47
Identities = 83/86 (96%), Positives = 85/86 (98%)
Frame = +1
Query: 88 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 267
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 268 SKRGILRLKYPIEHGIVTNWDDMEKI 345
SKRGIL LKYPIEHGIVTNWDDMEKI
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 177 bits (431), Expect = 2e-45
Identities = 80/83 (96%), Positives = 82/83 (98%)
Frame = +1
Query: 88 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 267
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 268 SKRGILRLKYPIEHGIVTNWDDM 336
SKRGIL LKYPIEHGIVTNWDDM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDM 83
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 163 bits (397), Expect = 3e-41
Identities = 72/74 (97%), Positives = 73/74 (98%)
Frame = +1
Query: 142 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILRLKYPIEHGIVT 321
+AGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL LKYPIEHGIVT
Sbjct: 5 RAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 64
Query: 322 NWDDMEKIWHHTFY 363
NWDDMEKIWHHTFY
Sbjct: 65 NWDDMEKIWHHTFY 78
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 109 bits (262), Expect = 6e-25
Identities = 47/48 (97%), Positives = 47/48 (97%)
Frame = +1
Query: 220 MVGMGQKDSYVGDEAQSKRGILRLKYPIEHGIVTNWDDMEKIWHHTFY 363
MVGMGQKDSYVGDEAQSKRGIL LKYPIEHGIVTNWDDMEKIWHHTFY
Sbjct: 1 MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFY 48
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 105 bits (253), Expect = 7e-24
Identities = 43/83 (51%), Positives = 60/83 (72%)
Frame = +1
Query: 112 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILRL 291
+V+DNGSG+ KAGFAG+ P+ F + VGRP++ VM G D ++G +A+S RG+ +
Sbjct: 11 VVIDNGSGVIKAGFAGEQQPKVRFANFVGRPKYHRVMAGGLDGDIFIGPKAESNRGLFSI 70
Query: 292 KYPIEHGIVTNWDDMEKIWHHTF 360
+YP+EHGIV NW DMEKIW + F
Sbjct: 71 EYPMEHGIVNNWSDMEKIWEYIF 93
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 87.8 bits (208), Expect = 2e-18
Identities = 41/85 (48%), Positives = 56/85 (65%), Gaps = 2/85 (2%)
Frame = +1
Query: 112 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVM-VGMGQ-KDSYVGDEAQSKRGIL 285
+VVDNG+G K G+AG + P +FPS+VGRP + VG + KD VG+E R +L
Sbjct: 9 IVVDNGTGFVKCGYAGTNFPAHIFPSMVGRPIVRSTQRVGNIEIKDLMVGEECSQLRQML 68
Query: 286 RLKYPIEHGIVTNWDDMEKIWHHTF 360
+ YP+++GIV NWDDM +W HTF
Sbjct: 69 DINYPMDNGIVRNWDDMAHVWDHTF 93
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 63.3 bits (147), Expect = 5e-11
Identities = 37/105 (35%), Positives = 52/105 (49%), Gaps = 13/105 (12%)
Frame = +1
Query: 88 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSI------VGRPRHQG------VMVGM 231
M ++ A V+DNG+G K G+AG+ P+ + PS V Q V G+
Sbjct: 1 MSAHQLPACVIDNGTGYTKLGYAGNTEPQFIIPSAIAVKDKVASSNSQAMRWNNRVGAGI 60
Query: 232 GQKDSYVGDEAQSKRGI-LRLKYPIEHGIVTNWDDMEKIWHHTFY 363
D ++GDEA S +KYPI HGIV +WD ME+ W +
Sbjct: 61 DDLDFFIGDEALSPAATNYTVKYPIRHGIVEDWDLMERYWEQCIF 105
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 47.2 bits (107), Expect = 4e-06
Identities = 27/86 (31%), Positives = 43/86 (50%)
Frame = +1
Query: 103 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 282
+ ++ DNG K G ++PR V SIV + +H+ V + + +E K +
Sbjct: 3 LTTIIFDNGGHNMKIGTIDSESPRLVPNSIV-KAKHEKKRVFVAHEQ----EECSDKFSL 57
Query: 283 LRLKYPIEHGIVTNWDDMEKIWHHTF 360
++ PIE G V NWD ++IW TF
Sbjct: 58 FYVR-PIERGYVVNWDTQQQIWEKTF 82
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 47.2 bits (107), Expect = 4e-06
Identities = 27/86 (31%), Positives = 43/86 (50%)
Frame = +1
Query: 103 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 282
+ ++ DNG K G ++PR V SIV + +H+ V + + +E K +
Sbjct: 3 LTTIIFDNGGHNMKIGTIDSESPRLVPNSIV-KAKHEKKRVFVAHEQ----EECSDKFSL 57
Query: 283 LRLKYPIEHGIVTNWDDMEKIWHHTF 360
++ PIE G V NWD ++IW TF
Sbjct: 58 FYVR-PIERGYVVNWDTQQQIWEKTF 82
>AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical
protein F59E12.1 protein.
Length = 811
Score = 33.9 bits (74), Expect = 0.036
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -1
Query: 233 PMPTMTPW*RGRPTIEGNTARGASSPAKPALHIPDPL 123
P T TP RGRP I + ++ P P PDPL
Sbjct: 336 PPATQTPRSRGRPRIHSSASKKTEKPETPRAESPDPL 372
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 33.5 bits (73), Expect = 0.047
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +1
Query: 97 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIV 195
+EV+ LV D GS + GFAG++ P+ PS +
Sbjct: 9 DEVSGLVFDAGSQSFRVGFAGEEYPKGDIPSYI 41
>U42439-7|AAA83511.1| 304|Caenorhabditis elegans Collagen protein
110 protein.
Length = 304
Score = 29.9 bits (64), Expect = 0.58
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 195 GATSSPGRHGRHGSEG 242
G + +PGRHGRHG+ G
Sbjct: 109 GPSGTPGRHGRHGAPG 124
>AF188477-1|AAF01458.1| 1418|Caenorhabditis elegans phospholipase C
beta protein.
Length = 1418
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -1
Query: 206 RGRPTIEGNTARGASSPAKPALHIPDPLSTTNAATSS 96
R P +E + +SSPA P++ P P +T++ +TSS
Sbjct: 641 RAHPEVEQPVS--SSSPATPSISGPPPCATSSGSTSS 675
>AF179426-1|AAF05701.1| 1431|Caenorhabditis elegans phospholipase C
beta homolog EGL-8 protein.
Length = 1431
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -1
Query: 206 RGRPTIEGNTARGASSPAKPALHIPDPLSTTNAATSS 96
R P +E + +SSPA P++ P P +T++ +TSS
Sbjct: 642 RAHPEVEQPVS--SSSPATPSISGPPPCATSSGSTSS 676
>AF068714-6|AAL77167.1| 1419|Caenorhabditis elegans Egg laying
defective protein 8,isoform a protein.
Length = 1419
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -1
Query: 206 RGRPTIEGNTARGASSPAKPALHIPDPLSTTNAATSS 96
R P +E + +SSPA P++ P P +T++ +TSS
Sbjct: 642 RAHPEVEQPVS--SSSPATPSISGPPPCATSSGSTSS 676
>AF068714-5|AAL77168.1| 1431|Caenorhabditis elegans Egg laying
defective protein 8,isoform b protein.
Length = 1431
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -1
Query: 206 RGRPTIEGNTARGASSPAKPALHIPDPLSTTNAATSS 96
R P +E + +SSPA P++ P P +T++ +TSS
Sbjct: 642 RAHPEVEQPVS--SSSPATPSISGPPPCATSSGSTSS 676
>AF025453-5|AAY55851.1| 279|Caenorhabditis elegans Hypothetical
protein C08F1.11 protein.
Length = 279
Score = 27.9 bits (59), Expect = 2.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 142 KAGFAGDDAPRAVFPSIVGRPRHQG 216
KA + G D P+A F I+G ++G
Sbjct: 44 KASYLGHDTPQATFREIIGNKEYRG 68
>Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical protein
C12C8.3b protein.
Length = 1143
Score = 27.5 bits (58), Expect = 3.1
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -3
Query: 294 FESEDTPLALCLITYVGVLLTHADHDALVTRSPHDRGKYGA-GSVVSRETGFAHSGPIVY 118
F++ D+P LC + +L+T ++ L SP + + GS + F +V
Sbjct: 980 FKNLDSPRGLCYLPDGQLLITDFNNHRLAVLSPRNMSEMKVYGSEGDGDGMFVRPQGVVI 1039
Query: 117 DQRGNFLV 94
D G+ LV
Sbjct: 1040 DPEGHILV 1047
>Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical protein
C12C8.3a protein.
Length = 1147
Score = 27.5 bits (58), Expect = 3.1
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -3
Query: 294 FESEDTPLALCLITYVGVLLTHADHDALVTRSPHDRGKYGA-GSVVSRETGFAHSGPIVY 118
F++ D+P LC + +L+T ++ L SP + + GS + F +V
Sbjct: 984 FKNLDSPRGLCYLPDGQLLITDFNNHRLAVLSPRNMSEMKVYGSEGDGDGMFVRPQGVVI 1043
Query: 117 DQRGNFLV 94
D G+ LV
Sbjct: 1044 DPEGHILV 1051
>AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.
Length = 1147
Score = 27.5 bits (58), Expect = 3.1
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -3
Query: 294 FESEDTPLALCLITYVGVLLTHADHDALVTRSPHDRGKYGA-GSVVSRETGFAHSGPIVY 118
F++ D+P LC + +L+T ++ L SP + + GS + F +V
Sbjct: 984 FKNLDSPRGLCYLPDGQLLITDFNNHRLAVLSPRNMSEMKVYGSEGDGDGMFVRPQGVVI 1043
Query: 117 DQRGNFLV 94
D G+ LV
Sbjct: 1044 DPEGHILV 1051
>AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.
Length = 1143
Score = 27.5 bits (58), Expect = 3.1
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -3
Query: 294 FESEDTPLALCLITYVGVLLTHADHDALVTRSPHDRGKYGA-GSVVSRETGFAHSGPIVY 118
F++ D+P LC + +L+T ++ L SP + + GS + F +V
Sbjct: 980 FKNLDSPRGLCYLPDGQLLITDFNNHRLAVLSPRNMSEMKVYGSEGDGDGMFVRPQGVVI 1039
Query: 117 DQRGNFLV 94
D G+ LV
Sbjct: 1040 DPEGHILV 1047
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 24.2 bits (50), Expect(2) = 3.6
Identities = 12/38 (31%), Positives = 14/38 (36%)
Frame = +3
Query: 207 SPGRHGRHGSEGLLRR**GTEQEGYPQTQIPHRTRHRH 320
+P HG HG G+ G GY H H H
Sbjct: 599 APAHHGHHGEHGVHH---GHHGAGYGAHHGHHGAHHHH 633
Score = 21.4 bits (43), Expect(2) = 3.6
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = +3
Query: 195 GATSSPGRHGRHG 233
G+ SP HG HG
Sbjct: 553 GSHHSPAHHGHHG 565
>Z82258-1|CAB05122.2| 906|Caenorhabditis elegans Hypothetical
protein C27H2.2a protein.
Length = 906
Score = 27.1 bits (57), Expect = 4.1
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Frame = -1
Query: 350 CQIFSISSQLVTMPC-SMGYLSLRIPL----LLCASSPT*ESF*PMP 225
CQ+FS QLVTM SMG + L++ + LL + S T + P P
Sbjct: 251 CQLFSSQPQLVTMNLNSMGTIKLQLVVTWLPLLASKSSTKPTIAPNP 297
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 27.1 bits (57), Expect = 4.1
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3
Query: 195 GATSSPGRHGRHGS 236
G PGRHGRHGS
Sbjct: 358 GPPHCPGRHGRHGS 371
>Z83225-2|CAB05722.1| 732|Caenorhabditis elegans Hypothetical
protein F42H11.2 protein.
Length = 732
Score = 26.6 bits (56), Expect = 5.4
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +1
Query: 196 GRPRHQGVMVGMGQKDSYVGD----EAQSKRGILRLKYPIEHGIVTNWDDMEKIWHHTF 360
G PRH+ + G+ ++++V + EA + + K HG +WD++ K + TF
Sbjct: 629 GIPRHE-ISHGVSDEEAFVREASIIEAVKLKNLRNKKAGEFHGTTKSWDNITKSEYGTF 686
>Z81097-19|CAB03177.1| 732|Caenorhabditis elegans Hypothetical
protein F42H11.2 protein.
Length = 732
Score = 26.6 bits (56), Expect = 5.4
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +1
Query: 196 GRPRHQGVMVGMGQKDSYVGD----EAQSKRGILRLKYPIEHGIVTNWDDMEKIWHHTF 360
G PRH+ + G+ ++++V + EA + + K HG +WD++ K + TF
Sbjct: 629 GIPRHE-ISHGVSDEEAFVREASIIEAVKLKNLRNKKAGEFHGTTKSWDNITKSEYGTF 686
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 25.8 bits (54), Expect = 9.5
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 203 GRPTIEGNTARGASSPAKPALHIP 132
G P GN +GAS+P +P P
Sbjct: 123 GAPGAPGNPGKGASAPCEPVTQPP 146
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 25.8 bits (54), Expect = 9.5
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 203 GRPTIEGNTARGASSPAKPALHIP 132
G P GN +GAS+P +P P
Sbjct: 123 GAPGAPGNPGKGASAPCEPVTQPP 146
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 25.8 bits (54), Expect = 9.5
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = -1
Query: 233 PMPTMTPW*RGRPTIEGNTARGASSPAKPALHIPDPLSTTNAATSSS 93
P+PT T PT T G +P+ +P P +T + T ++
Sbjct: 492 PVPTTTNTPPANPTTATPTTVGTMTPSTGTTTVPVPTTTGSPTTQTT 538
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 25.8 bits (54), Expect = 9.5
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 203 GRPTIEGNTARGASSPAKPALHIP 132
G P GN +GAS+P +P P
Sbjct: 123 GAPGAPGNPGKGASAPCEPVTQPP 146
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 25.8 bits (54), Expect = 9.5
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 203 GRPTIEGNTARGASSPAKPALHIP 132
G P GN +GAS+P +P P
Sbjct: 123 GAPGAPGNPGKGASAPCEPVTQPP 146
>AF025469-6|AAR12979.1| 813|Caenorhabditis elegans Hypothetical
protein W09B6.1b protein.
Length = 813
Score = 25.8 bits (54), Expect = 9.5
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -3
Query: 114 QRGNFLVAHCELVF 73
Q G F+V HCE+V+
Sbjct: 645 QNGEFMVTHCEIVY 658
>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
protein W09B6.1a protein.
Length = 2054
Score = 25.8 bits (54), Expect = 9.5
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -3
Query: 114 QRGNFLVAHCELVF 73
Q G F+V HCE+V+
Sbjct: 645 QNGEFMVTHCEIVY 658
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,345,300
Number of Sequences: 27780
Number of extensions: 169900
Number of successful extensions: 640
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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