Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_J16
         (191 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces...    89   8e-20
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma...    25   1.4  
SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|...    23   4.2  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    23   5.6  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    23   7.4  
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     22   9.8  
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    22   9.8  
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    22   9.8  

>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score = 89.0 bits (211), Expect = 8e-20
 Identities = 44/55 (80%), Positives = 46/55 (83%)
 Frame = +3

Query: 24  ATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQ 188
           A  ISKKRKFV DGVF AELNEF TREL+E+GYSG EVRVTP RSEIII AT TQ
Sbjct: 4   AFTISKKRKFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQ 58


>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 193

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +2

Query: 113 GWLLRCGGAC 142
           GWL  CGGAC
Sbjct: 70  GWLHNCGGAC 79


>SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 70  KTPSPTNFRFLEMFVAMITLVP 5
           +TPS  NF+++ + V MI  VP
Sbjct: 51  ETPSGFNFKWILIVVVMILRVP 72


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 8   HEGNHGDEHFQKTK 49
           HE +H  +HF+K K
Sbjct: 112 HESDHSRKHFEKNK 125


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 143 DTHLHTGVAILGQLPREELIELRLKNSITDEFSF 42
           D +L T V  L +LP EEL+  +  NS+    SF
Sbjct: 673 DVYLPT-VESLQKLPAEELMRQKEINSLKTTMSF 705


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = +1

Query: 151 YVQKSLLWPQGR 186
           Y+Q+++LW QG+
Sbjct: 304 YIQQTILWTQGQ 315


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -1

Query: 131 HTGVAILGQLPRE-ELIELRLKNSIT 57
           H G AI+  LP+E E I L LK+S++
Sbjct: 542 HNGAAIMFLLPKESEYINL-LKSSVS 566


>SPAC637.11 |suv3||ATP-dependent RNA helicase
          Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +3

Query: 21 MATNISKKRKFVGDGVFKAELNEF 92
          ++ ++ ++RKF G+ ++ A LN F
Sbjct: 26 LSKDVFQQRKFPGNTLWAAALNRF 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 793,693
Number of Sequences: 5004
Number of extensions: 11703
Number of successful extensions: 23
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 42946120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)