Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_J16
         (191 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1220 - 24966169-24966327,24966421-24966552,24966639-249666...    96   3e-21
10_08_0211 + 15899017-15901392                                         29   0.69 
04_03_0746 + 19247529-19247723,19247808-19248000,19248145-192482...    27   1.6  
04_04_0603 + 26539104-26539148,26539941-26540046,26540465-265406...    26   3.7  
04_01_0455 - 5889132-5889462,5889583-5889611,5890112-5890141           26   3.7  
06_03_0311 + 19466258-19466303,19466496-19467087,19468059-194685...    26   4.9  
11_06_0467 - 23929202-23929444                                         25   6.4  
11_06_0109 + 20202629-20205452,20206354-20206578,20207208-202080...    25   6.4  
08_02_0952 - 22981116-22981268,22981930-22981974,22982052-229821...    25   8.5  

>07_03_1220 -
           24966169-24966327,24966421-24966552,24966639-24966693,
           24967496-24967667,24967771-24967918,24968015-24968050
          Length = 233

 Score = 96.3 bits (229), Expect = 3e-21
 Identities = 47/55 (85%), Positives = 50/55 (90%)
 Frame = +3

Query: 27  TNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQS 191
           T ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+
Sbjct: 5   TQISKKRKFVADGVFFAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQN 59


>10_08_0211 + 15899017-15901392
          Length = 791

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 121 TPVWRCVSHPYVQKSLLWPQ 180
           T +W  +SH  +Q+S LWPQ
Sbjct: 696 TQIWAILSHCNIQESNLWPQ 715


>04_03_0746 +
           19247529-19247723,19247808-19248000,19248145-19248230,
           19248861-19249028,19249445-19249738
          Length = 311

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +3

Query: 27  TNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEI 164
           T+++  RK +      A L E L  ELA DG +  EV    + SEI
Sbjct: 149 TDVNHFRKLMASKAAAANLYETLRMELAGDGIAITEVIPGVVESEI 194


>04_04_0603 +
           26539104-26539148,26539941-26540046,26540465-26540603,
           26540837-26540945,26541030-26541166,26541610-26541746,
           26542184-26542290,26542483-26542610,26543418-26543469
          Length = 319

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 109 PRMATPVWRCVSHPYVQKSLLW 174
           P+  TP W  V   YV+KS+LW
Sbjct: 244 PKGKTP-WEDVKREYVRKSILW 264


>04_01_0455 - 5889132-5889462,5889583-5889611,5890112-5890141
          Length = 129

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -1

Query: 185 RPCGHNNDF*TYGCDTHLHTGVAILGQLPREELIELRLKNSITD 54
           R  GHN+    YG +TH ++GV   G+    +  E +L  S TD
Sbjct: 60  RTDGHNHA--AYGANTHSNSGVMNKGENSGADSNERKLMVSTTD 101


>06_03_0311 +
           19466258-19466303,19466496-19467087,19468059-19468524,
           19470028-19470081,19470112-19470226,19470499-19470605
          Length = 459

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -2

Query: 190 LCVLVAIIMISERMGVTR 137
           LCVL+ I++ISE +GV R
Sbjct: 5   LCVLLCILVISEVVGVPR 22


>11_06_0467 - 23929202-23929444
          Length = 80

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -1

Query: 149 GCDTHLHTGVAILGQLPREELIELRLKNSITDEFSFFGNVRRHD 18
           GC T L     + G + RE++ E  ++ ++   F+FFG +  H+
Sbjct: 24  GCFTLLDLKKKVGGGMGREDVGEEPVQRALPVPFTFFGQLGFHN 67


>11_06_0109 +
           20202629-20205452,20206354-20206578,20207208-20208091,
           20208692-20208814
          Length = 1351

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 119 AILGQLPREELIELRLKNSITDE 51
           A +G +PRE    L  KNSITD+
Sbjct: 24  APIGCIPRERDALLEFKNSITDD 46


>08_02_0952 -
           22981116-22981268,22981930-22981974,22982052-22982153,
           22983262-22983468,22984783-22985042,22985338-22985442,
           22986244-22986247,22986877-22986962,22987022-22987064
          Length = 334

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 131 GGACHTHTFRNHYYGHK 181
           GG  HTH  +NH + H+
Sbjct: 46  GGHSHTHDHQNHNHSHE 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,562,792
Number of Sequences: 37544
Number of extensions: 101888
Number of successful extensions: 215
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 14,793,348
effective HSP length: 43
effective length of database: 13,178,956
effective search space used: 263579120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)