Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_J16
         (191 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X55715-1|CAA39248.1|  243|Homo sapiens protein ( Human Hums3 mRN...   103   1e-22
U14992-1|AAB60338.1|  243|Homo sapiens ribosomal protein S3 prot...   103   1e-22
U14991-1|AAB60337.1|  243|Homo sapiens ribosomal protein S3 prot...   103   1e-22
U14990-1|AAB60336.1|  243|Homo sapiens ribosomal protein S3 prot...   103   1e-22
L16016-1|AAA18095.1|   95|Homo sapiens ribosomal protein S3 prot...   103   1e-22
BC100284-1|AAI00285.1|  243|Homo sapiens ribosomal protein S3 pr...   103   1e-22
BC071917-1|AAH71917.1|  243|Homo sapiens ribosomal protein S3 pr...   103   1e-22
BC071669-1|AAH71669.1|  117|Homo sapiens RPS3 protein protein.        103   1e-22
BC034149-1|AAH34149.1|  243|Homo sapiens ribosomal protein S3 pr...   103   1e-22
BC003137-1|AAH03137.1|  243|Homo sapiens ribosomal protein S3 pr...   103   1e-22
AY791291-1|AAV40835.1|  243|Homo sapiens ribosomal protein S3 pr...   103   1e-22
AK223048-1|BAD96768.1|  243|Homo sapiens ribosomal protein S3 va...   103   1e-22
AB061838-1|BAB79476.1|  243|Homo sapiens ribosomal protein S3 pr...   103   1e-22
S42658-1|AAB19349.2|  243|Homo sapiens S3 ribosomal protein prot...   102   2e-22
BC013196-1|AAH13196.1|  242|Homo sapiens Unknown (protein for IM...   101   4e-22
BC003577-1|AAH03577.1|  242|Homo sapiens Unknown (protein for IM...   101   4e-22

>X55715-1|CAA39248.1|  243|Homo sapiens protein ( Human Hums3 mRNA
           for 40S ribosomal protein s3. ).
          Length = 243

 Score =  103 bits (247), Expect = 1e-22
 Identities = 49/57 (85%), Positives = 53/57 (92%)
 Frame = +3

Query: 21  MATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQS 191
           MA  ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+
Sbjct: 1   MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQN 57


>U14992-1|AAB60338.1|  243|Homo sapiens ribosomal protein S3
           protein.
          Length = 243

 Score =  103 bits (247), Expect = 1e-22
 Identities = 49/57 (85%), Positives = 53/57 (92%)
 Frame = +3

Query: 21  MATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQS 191
           MA  ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+
Sbjct: 1   MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQN 57


>U14991-1|AAB60337.1|  243|Homo sapiens ribosomal protein S3
           protein.
          Length = 243

 Score =  103 bits (247), Expect = 1e-22
 Identities = 49/57 (85%), Positives = 53/57 (92%)
 Frame = +3

Query: 21  MATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQS 191
           MA  ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+
Sbjct: 1   MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQN 57


>U14990-1|AAB60336.1|  243|Homo sapiens ribosomal protein S3
           protein.
          Length = 243

 Score =  103 bits (247), Expect = 1e-22
 Identities = 49/57 (85%), Positives = 53/57 (92%)
 Frame = +3

Query: 21  MATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQS 191
           MA  ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+
Sbjct: 1   MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQN 57


>L16016-1|AAA18095.1|   95|Homo sapiens ribosomal protein S3
           protein.
          Length = 95

 Score =  103 bits (247), Expect = 1e-22
 Identities = 49/57 (85%), Positives = 53/57 (92%)
 Frame = +3

Query: 21  MATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQS 191
           MA  ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+
Sbjct: 1   MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQN 57


>BC100284-1|AAI00285.1|  243|Homo sapiens ribosomal protein S3
           protein.
          Length = 243

 Score =  103 bits (247), Expect = 1e-22
 Identities = 49/57 (85%), Positives = 53/57 (92%)
 Frame = +3

Query: 21  MATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQS 191
           MA  ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+
Sbjct: 1   MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQN 57


>BC071917-1|AAH71917.1|  243|Homo sapiens ribosomal protein S3
           protein.
          Length = 243

 Score =  103 bits (247), Expect = 1e-22
 Identities = 49/57 (85%), Positives = 53/57 (92%)
 Frame = +3

Query: 21  MATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQS 191
           MA  ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+
Sbjct: 1   MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQN 57


>BC071669-1|AAH71669.1|  117|Homo sapiens RPS3 protein protein.
          Length = 117

 Score =  103 bits (247), Expect = 1e-22
 Identities = 49/57 (85%), Positives = 53/57 (92%)
 Frame = +3

Query: 21  MATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQS 191
           MA  ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+
Sbjct: 1   MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQN 57


>BC034149-1|AAH34149.1|  243|Homo sapiens ribosomal protein S3
           protein.
          Length = 243

 Score =  103 bits (247), Expect = 1e-22
 Identities = 49/57 (85%), Positives = 53/57 (92%)
 Frame = +3

Query: 21  MATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQS 191
           MA  ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+
Sbjct: 1   MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQN 57


>BC003137-1|AAH03137.1|  243|Homo sapiens ribosomal protein S3
           protein.
          Length = 243

 Score =  103 bits (247), Expect = 1e-22
 Identities = 49/57 (85%), Positives = 53/57 (92%)
 Frame = +3

Query: 21  MATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQS 191
           MA  ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+
Sbjct: 1   MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQN 57


>AY791291-1|AAV40835.1|  243|Homo sapiens ribosomal protein S3
           protein.
          Length = 243

 Score =  103 bits (247), Expect = 1e-22
 Identities = 49/57 (85%), Positives = 53/57 (92%)
 Frame = +3

Query: 21  MATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQS 191
           MA  ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+
Sbjct: 1   MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQN 57


>AK223048-1|BAD96768.1|  243|Homo sapiens ribosomal protein S3
           variant protein.
          Length = 243

 Score =  103 bits (247), Expect = 1e-22
 Identities = 49/57 (85%), Positives = 53/57 (92%)
 Frame = +3

Query: 21  MATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQS 191
           MA  ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+
Sbjct: 1   MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQN 57


>AB061838-1|BAB79476.1|  243|Homo sapiens ribosomal protein S3
           protein.
          Length = 243

 Score =  103 bits (247), Expect = 1e-22
 Identities = 49/57 (85%), Positives = 53/57 (92%)
 Frame = +3

Query: 21  MATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQS 191
           MA  ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+
Sbjct: 1   MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQN 57


>S42658-1|AAB19349.2|  243|Homo sapiens S3 ribosomal protein
           protein.
          Length = 243

 Score =  102 bits (244), Expect = 2e-22
 Identities = 48/57 (84%), Positives = 53/57 (92%)
 Frame = +3

Query: 21  MATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQS 191
           MA  ISK+RKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+
Sbjct: 1   MAVQISKRRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQN 57


>BC013196-1|AAH13196.1|  242|Homo sapiens Unknown (protein for
           IMAGE:4347401) protein.
          Length = 242

 Score =  101 bits (242), Expect = 4e-22
 Identities = 48/56 (85%), Positives = 52/56 (92%)
 Frame = +3

Query: 24  ATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQS 191
           A  ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+
Sbjct: 1   AVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQN 56


>BC003577-1|AAH03577.1|  242|Homo sapiens Unknown (protein for
           IMAGE:3544292) protein.
          Length = 242

 Score =  101 bits (242), Expect = 4e-22
 Identities = 48/56 (85%), Positives = 52/56 (92%)
 Frame = +3

Query: 24  ATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQS 191
           A  ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+
Sbjct: 1   AVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQN 56


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,108,190
Number of Sequences: 237096
Number of extensions: 444215
Number of successful extensions: 760
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 76,859,062
effective HSP length: 43
effective length of database: 66,663,934
effective search space used: 1333278680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)