Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_J16
         (191 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39851-9|AAF99870.1|  247|Caenorhabditis elegans Ribosomal prote...    85   9e-18
Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical pr...    30   0.26 
Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical pr...    30   0.26 
AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm (myotubu...    26   4.3  
U40953-2|AAB52647.1|  483|Caenorhabditis elegans Hypothetical pr...    25   9.8  
AL031633-23|CAA21030.1|  188|Caenorhabditis elegans Hypothetical...    25   9.8  
AF003134-5|AAB54139.1|  357|Caenorhabditis elegans Nek (never in...    25   9.8  

>U39851-9|AAF99870.1|  247|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 3 protein.
          Length = 247

 Score = 84.6 bits (200), Expect = 9e-18
 Identities = 39/54 (72%), Positives = 47/54 (87%)
 Frame = +3

Query: 30  NISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQS 191
           N++KK+K V  G+FKAELN FL +ELAEDGYSGVEVR TP R+E+IIMATRTQ+
Sbjct: 6   NVTKKKKAVIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQN 59


>Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical
           protein C05C10.2b protein.
          Length = 1553

 Score = 29.9 bits (64), Expect = 0.26
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 21  MATNISKKRKFVGDGVFKAELNEFLTRELAEDGY 122
           ++ +I KK  F GDG F     E    E+ +DGY
Sbjct: 889 LSRDIPKKFSFKGDGEFFVSQREVFENEILDDGY 922


>Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical
           protein C05C10.2a protein.
          Length = 1551

 Score = 29.9 bits (64), Expect = 0.26
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 21  MATNISKKRKFVGDGVFKAELNEFLTRELAEDGY 122
           ++ +I KK  F GDG F     E    E+ +DGY
Sbjct: 889 LSRDIPKKFSFKGDGEFFVSQREVFENEILDDGY 922


>AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm
           (myotubularin) family protein 5 protein.
          Length = 1744

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 75  AELNEFLTRELAEDGYSGVEVRVTPIRSEI 164
           +EL  FLT EL E+G S +E+R   +  E+
Sbjct: 138 SELIRFLTYELVEEG-STIEIRTKTLHVEL 166


>U40953-2|AAB52647.1|  483|Caenorhabditis elegans Hypothetical
           protein F53B1.2 protein.
          Length = 483

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 87  EFLTRELAEDGYSGVEVRVTP 149
           EFL++++ E G SGV  R TP
Sbjct: 75  EFLSQKVVEIGNSGVHHRSTP 95


>AL031633-23|CAA21030.1|  188|Caenorhabditis elegans Hypothetical
           protein Y39A1A.21a protein.
          Length = 188

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +3

Query: 33  ISKKRKFVGDGVFKAELNEFLTREL--AEDGYSGVEVRVTPIRSEIIIMATR 182
           + K+ +F+   +FK +LN + T  +  AE     +  +++ +RS   ++A R
Sbjct: 109 LGKETRFMRKNIFKTDLNPYQTAVIFGAESLMGDLVPKLSEMRSNTNLLACR 160


>AF003134-5|AAB54139.1|  357|Caenorhabditis elegans Nek (never in
           mitosis kinase) likeprotein 2 protein.
          Length = 357

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 15/53 (28%), Positives = 21/53 (39%)
 Frame = +1

Query: 25  RRTFPKNENSSVMEFLXXXXXXXXXXXWPRMATPVWRCVSHPYVQKSLLWPQG 183
           R+T  K  +  + + L            P   +P   C S PY QKS +W  G
Sbjct: 148 RKTVLKLSDFGISKELGTKSAASTVIGTPNYLSPEI-CESRPYNQKSDMWSLG 199


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,455,920
Number of Sequences: 27780
Number of extensions: 69836
Number of successful extensions: 137
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 12,740,198
effective HSP length: 43
effective length of database: 11,545,658
effective search space used: 230913160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)