Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_J16
         (191 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   1.0  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    19   5.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    19   5.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             19   5.4  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    19   7.1  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    19   7.1  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    18   9.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    18   9.4  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    18   9.4  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 1.0
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 122 LRCGGACHTHTFRNHY 169
           LR GG  H H  + HY
Sbjct: 13  LRNGGVEHPHQHQQHY 28


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +2

Query: 14  GNHGDEHFQKTKIR 55
           G+HGD   ++T++R
Sbjct: 339 GDHGDHAPKQTEVR 352


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +2

Query: 14  GNHGDEHFQKTKIR 55
           G+HGD   ++T++R
Sbjct: 339 GDHGDHAPKQTEVR 352


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +3

Query: 6   GTRVIMATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRV 143
           GT  I    + K+R+  G+G    + +E    E    G S  E R+
Sbjct: 257 GTTTIPTRRLRKRRQNDGEGADDRDDDEENEEEEDGRGQSEAEKRL 302


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
          protein.
          Length = 459

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 5/8 (62%), Positives = 8/8 (100%)
 Frame = -1

Query: 53 EFSFFGNV 30
          E+SF+GN+
Sbjct: 5  EYSFYGNI 12


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 104 LPREELIELRLKNSI 60
           L   +LIE+ LKN +
Sbjct: 65  LKLSQLIEMNLKNQV 79


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic
          acetylcholine receptor alpha9subunit protein.
          Length = 431

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -1

Query: 74 LKNSITDEFSFFGNVRRHDYP 12
          L+N     FS+  N + +D+P
Sbjct: 21 LENDNEFGFSYLLNCKNYDHP 41


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 5/15 (33%), Positives = 8/15 (53%)
 Frame = +2

Query: 134 GACHTHTFRNHYYGH 178
           G  H H   +H++ H
Sbjct: 422 GHSHIHATPHHHHSH 436


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 5/10 (50%), Positives = 7/10 (70%)
 Frame = +2

Query: 116 WLLRCGGACH 145
           + L CG +CH
Sbjct: 35  YCLGCGDSCH 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,297
Number of Sequences: 438
Number of extensions: 809
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 43
effective length of database: 127,509
effective search space used:  2550180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)