Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_J15
         (346 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef...   194   2e-51
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef...   194   2e-51
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef...   194   2e-51
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    51   6e-08
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E...    32   0.022
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p...    26   1.4  
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos...    26   1.4  
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos...    26   1.4  
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma...    26   1.4  
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom...    25   2.5  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    25   3.3  
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S...    25   4.4  
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    24   5.8  
SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch...    24   5.8  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      24   5.8  
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    24   7.6  

>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
           Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 460

 Score =  194 bits (474), Expect = 2e-51
 Identities = 86/112 (76%), Positives = 99/112 (88%)
 Frame = +2

Query: 11  EVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVL 190
           EVKSVEMHHE+L   +PGDNVGFNVKNVSVK++RRG V GDSKN+PP G A FTAQVI+L
Sbjct: 286 EVKSVEMHHESLDAGLPGDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIIL 345

Query: 191 NHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDA 346
           NHPGQIS GY+PVLDCHTAHIACKFAE+ EK+DRR+GK  E++PK +KSGDA
Sbjct: 346 NHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDA 397


>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
           Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score =  194 bits (474), Expect = 2e-51
 Identities = 86/112 (76%), Positives = 99/112 (88%)
 Frame = +2

Query: 11  EVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVL 190
           EVKSVEMHHE+L   +PGDNVGFNVKNVSVK++RRG V GDSKN+PP G A FTAQVI+L
Sbjct: 286 EVKSVEMHHESLDAGLPGDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIIL 345

Query: 191 NHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDA 346
           NHPGQIS GY+PVLDCHTAHIACKFAE+ EK+DRR+GK  E++PK +KSGDA
Sbjct: 346 NHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDA 397


>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
           Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score =  194 bits (474), Expect = 2e-51
 Identities = 86/112 (76%), Positives = 99/112 (88%)
 Frame = +2

Query: 11  EVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVL 190
           EVKSVEMHHE+L   +PGDNVGFNVKNVSVK++RRG V GDSKN+PP G A FTAQVI+L
Sbjct: 286 EVKSVEMHHESLDAGLPGDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIIL 345

Query: 191 NHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDA 346
           NHPGQIS GY+PVLDCHTAHIACKFAE+ EK+DRR+GK  E++PK +KSGDA
Sbjct: 346 NHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDA 397


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 50.8 bits (116), Expect = 6e-08
 Identities = 28/90 (31%), Positives = 46/90 (51%)
 Frame = +2

Query: 38  EALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNG 217
           E +  ++ GD V   V+     +++ GYV   +KN P      F AQ+ +L  P  ++ G
Sbjct: 519 EEISSSICGDQVRLRVRGDD-SDVQTGYVLTSTKN-PVHATTRFIAQIAILELPSILTTG 576

Query: 218 YTPVLDCHTAHIACKFAEIKEKVDRRTGKS 307
           Y+ V+  HTA     FA++  K+D+   KS
Sbjct: 577 YSCVMHIHTAVEEVSFAKLLHKLDKTNRKS 606


>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
           EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 32.3 bits (70), Expect = 0.022
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +2

Query: 14  VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 124
           V  +EM  + L  AV GDN G  ++++  ++L+RG +
Sbjct: 298 VTGIEMFKKQLDAAVAGDNCGLLLRSIKREQLKRGMI 334


>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 151 QGSCRLHSASHCAKSPRSNIKRIHTCIGLPHSPHSLQIC-RNQRESRP 291
           +GS    ++S   +  +S  + I  CIG+  SPH   +C R Q   +P
Sbjct: 90  KGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQLNGKP 137


>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 30  CTTRLYKKLYPVTMLVSTSKTYLSRNCAVVTLQEIRKTTHPGEL 161
           CT  +  KL+PV  L     T    + A+ T+  I  T  PG++
Sbjct: 196 CTMSIEGKLFPVETLFLQKPTENYVDSAIETVININSTYPPGDI 239


>SPAC631.01c |acp2||F-actin capping protein beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 268

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -2

Query: 342 SPDLMDLGLSSVDLPVRRSTFS 277
           +PDL D+ LSSVD P++ +T S
Sbjct: 30  APDLADVLLSSVDQPLKVNTCS 51


>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 396

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -2

Query: 336 DLMDLGLSSVDL--PVRRSTFSLISANLQAMWAVWQSNTGVY 217
           +L  LG++ +    P +RST S ++  L   W  +  N GVY
Sbjct: 316 ELSKLGVTIIGSKDPKKRSTHSYVAKILNPEWDAFLKNEGVY 357


>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 163

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 295 TTVDFLFDFGKFAGYVGCVAIQYRCVSV*YLTWV 194
           T +D+LF    F+  +G   + Y  ++V Y+ WV
Sbjct: 73  TLIDYLFFSPPFSLSIGPSLLVYLSIAVSYMLWV 106


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 15/68 (22%), Positives = 33/68 (48%)
 Frame = +3

Query: 60  PVTMLVSTSKTYLSRNCAVVTLQEIRKTTHPGELQTSQRKSLC*ITQVKYQTDTHLYWIA 239
           P + +++ S +  S +  +VT   ++ TTH  +++T    +    T +    D+H +   
Sbjct: 379 PTSSILTNSGSIKSGDHQIVTTSFVQTTTHGSQVETLTYVTTLTETILTTTYDSHTFLTT 438

Query: 240 TQPT*PAN 263
             P+ P+N
Sbjct: 439 ITPS-PSN 445


>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 276 LISANLQAMWAVWQSNTGV 220
           L+SA+    W +W  +TGV
Sbjct: 280 LVSASFDTTWRLWDVHTGV 298


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 188 LNHPGQISNGYTPVLDCHTAHIACK 262
           L HP Q+SN +T    C  A  AC+
Sbjct: 305 LPHPIQLSNYFTLPSSCAQADAACQ 329


>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = -2

Query: 345 ASPDLMDLGLSSVDLPVRRSTFSLISANLQAMWAVWQSNTGVYPF 211
           ++ +L+D  LSSV L +  +  S++S+ +  +      + G+ PF
Sbjct: 131 STTELLDRLLSSVPLEIYSTPVSVLSSQIDLLRRFATDSDGLTPF 175


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 124 NVTTAQFLDRYVFDVETNIVTGYS 53
           ++T   F+D YV +++  IV G+S
Sbjct: 373 SLTDTSFMDDYVNELQLEIVPGFS 396


>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 264 NLQAMWAVWQSNTGVYPFDI 205
           N + MWAVW +   +  FD+
Sbjct: 295 NFKIMWAVWGTMRTINSFDL 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,556,200
Number of Sequences: 5004
Number of extensions: 31385
Number of successful extensions: 89
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)