Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_J14
         (335 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    29   0.25 
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    27   0.58 
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    27   0.58 
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    26   1.3  
SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces pombe...    25   2.3  
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    24   7.1  
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    24   7.1  
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon...    24   7.1  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    23   9.4  

>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 28.7 bits (61), Expect = 0.25
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 158 TCKQENIFSNWLEEKVELPIFDNIPERVEPTPQVVVAQP 274
           T K    F+N L E + L     IP+++EP     V QP
Sbjct: 753 TSKPTQRFANELAEDMSLAFHSTIPKKMEPDSVTSVTQP 791


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 27.5 bits (58), Expect = 0.58
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +2

Query: 227 IPERVEPTPQVVVAQPIPYSAPQTTE 304
           IPE V  TPQ   + PIP S P   E
Sbjct: 195 IPETVPSTPQPASSLPIPSSPPAALE 220


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 27.5 bits (58), Expect = 0.58
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 296 FEEQSMESVELQPLEVLAPHAPEYYQKLVVPPF 198
           F     + +EL  L VL+   P Y   L +PPF
Sbjct: 223 FMNSKRKKLELPSLPVLSTAGPSYTNSLALPPF 255


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 158 TCKQENIFSNWLEEKVELPIFDNIPE 235
           +CK+ + FSN   E  E+  FD+ P+
Sbjct: 487 SCKESSEFSNQTTENSEMEFFDDRPD 512


>SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +2

Query: 215 IFDNIPERVEPTPQVVVAQPIPYSAPQ 295
           + D IPE   P PQV    P P   P+
Sbjct: 38  MIDEIPESDLPAPQVSTFPPTPAKTPK 64


>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -1

Query: 233 PEYYQKLVVPPFPPANWRKYSLVCRC 156
           PE+     +PP+PP      S  C C
Sbjct: 253 PEWASSWYLPPYPPQASDMASTYCAC 278


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -1

Query: 233 PEYYQKLVVPPFPPANWRKYSLVCRC 156
           PE+     +PP+PP      S  C C
Sbjct: 253 PEWASSWYLPPYPPQASDMASTYCAC 278


>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
           of oxoglutarate dehydrogenase complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 230 PERVEPTPQVVVAQPIPYSAPQTTE 304
           PE   P P+   ++P+  S P+ TE
Sbjct: 185 PEFSSPKPKPAKSEPVKQSKPKATE 209


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -2

Query: 301 CSLRSRVWNRLSYNHLRCWLH 239
           C L S  WNR+   H   W H
Sbjct: 262 CRLVSPTWNRILDVHTSYWKH 282


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,282,746
Number of Sequences: 5004
Number of extensions: 23328
Number of successful extensions: 82
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)