Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_J14
(335 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0591 + 19792694-19792738,19794190-19794509,19795104-197951... 29 0.93
04_01_0530 - 6928528-6929500,6929514-6930964 29 1.2
01_06_0780 - 31938064-31938127,31940191-31941743 28 1.6
02_02_0628 + 12365109-12365150,12366315-12366411,12366489-123665... 28 2.2
01_06_1833 + 40208360-40208587,40208677-40209024,40209101-40209676 28 2.2
04_01_0070 - 706640-706747,707221-707307,707397-707502,707585-70... 27 5.0
01_06_0624 - 30683249-30684631 26 6.6
11_01_0488 + 3770410-3770774,3771197-3771284,3771383-3771466,377... 26 8.7
04_01_0619 - 8125611-8127967,8128449-8130123 26 8.7
02_05_0848 + 32195610-32195625,32196078-32197585 26 8.7
>07_03_0591 +
19792694-19792738,19794190-19794509,19795104-19795161,
19798000-19798056,19798373-19798440,19798454-19798543,
19798619-19798820,19798902-19798988,19799642-19799719,
19799815-19800040,19800260-19800483,19801988-19802014,
19802470-19802518,19802594-19802688,19802778-19802864,
19802973-19803100,19803198-19803294,19803563-19803788,
19803888-19804294
Length = 856
Score = 29.1 bits (62), Expect = 0.93
Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +2
Query: 263 VAQPIPY-SAPQTTEVLLREFETV 331
V QP+PY +A T VLLR FET+
Sbjct: 359 VIQPVPYMTANGTIRVLLRSFETI 382
>04_01_0530 - 6928528-6929500,6929514-6930964
Length = 807
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Frame = +1
Query: 229 SGACGAN---TSSGCSSTDSILCSSNYR 303
SGACG N T G +T S LC NY+
Sbjct: 305 SGACGFNSYCTIDGTKNTTSCLCPQNYK 332
>01_06_0780 - 31938064-31938127,31940191-31941743
Length = 538
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +2
Query: 230 PERVEPTPQVVVAQPIPYSA 289
P R EPTPQ V A P+P +A
Sbjct: 6 PARREPTPQAVRASPMPSAA 25
>02_02_0628 +
12365109-12365150,12366315-12366411,12366489-12366554,
12367884-12367963,12368051-12368125,12368232-12368381,
12369816-12369881,12370141-12370206,12370653-12370763,
12370917-12371003,12371087-12371193,12372141-12372255,
12372472-12372537,12373521-12373615,12373700-12373880
Length = 467
Score = 27.9 bits (59), Expect = 2.2
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 179 FSNWLEEKVELPIFDNIPERVEPTPQVVVAQPIPYSAPQTTEVLL 313
F N+ +++ +P+FD IPE + VA PY+ Q LL
Sbjct: 200 FLNYFVKQI-VPVFDKIPEEKKLDLLKTVAASSPYATAQDARQLL 243
>01_06_1833 + 40208360-40208587,40208677-40209024,40209101-40209676
Length = 383
Score = 27.9 bits (59), Expect = 2.2
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 6/37 (16%)
Frame = -2
Query: 304 FCSLRSRVWNRLSYNHLRCW------LHTLRNIIKNW 212
FC L R NR++ H+ C LH LRN+I++W
Sbjct: 321 FCQL-GRDLNRIATVHMTCCIGLENKLHDLRNVIRDW 356
>04_01_0070 -
706640-706747,707221-707307,707397-707502,707585-707693,
707766-708145,708508-708601,709351-709475,709633-709674,
710822-710892,710979-711060,711157-711277,712404-712713
Length = 544
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -1
Query: 245 APHAPEYYQKLVVPPFPPANWRKYSLVCRCC 153
A AP + L PPFPP N R + R C
Sbjct: 32 AASAPPFLLDLASPPFPPKNPRPDFPLFRSC 62
>01_06_0624 - 30683249-30684631
Length = 460
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +2
Query: 188 WLEEKVELPIFDNIPERVEPTPQVVVAQPI 277
WLE + I D IP EP P++ P+
Sbjct: 197 WLEPRAVKAIRDGIPRPGEPAPRLFCVGPL 226
>11_01_0488 +
3770410-3770774,3771197-3771284,3771383-3771466,
3772128-3772224,3772324-3772411,3772800-3772848,
3773044-3773238,3773713-3774159
Length = 470
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +1
Query: 229 SGACGANTSSGCSSTD 276
SG+C A++SSG SST+
Sbjct: 352 SGSCSASSSSGSSSTE 367
>04_01_0619 - 8125611-8127967,8128449-8130123
Length = 1343
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 2 FGRGSAARRSNTIDYCLHDEPVQLSLYP 85
FG + RR+ + LHD P+Q S+ P
Sbjct: 73 FGVSCSRRRARVVALVLHDVPLQGSISP 100
>02_05_0848 + 32195610-32195625,32196078-32197585
Length = 507
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 251 VLAPHAPEYYQKLVVPPFPPANW 183
VL HAP + L PFP ++W
Sbjct: 142 VLLVHAPPEFDGLFCEPFPGSSW 164
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,616,777
Number of Sequences: 37544
Number of extensions: 164365
Number of successful extensions: 513
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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