Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_J14
         (335 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110485-3|CAB60351.1| 2145|Caenorhabditis elegans Hypothetical ...    29   1.1  
AF099914-5|AAC68757.2|  218|Caenorhabditis elegans Hypothetical ...    28   1.4  
Z81522-4|CAB04233.1|  771|Caenorhabditis elegans Hypothetical pr...    27   2.5  
Z70783-10|CAC70122.1| 1037|Caenorhabditis elegans Hypothetical p...    27   3.3  
Z69361-3|CAA93289.1|  533|Caenorhabditis elegans Hypothetical pr...    27   4.4  
Z68882-20|CAA93112.1|  533|Caenorhabditis elegans Hypothetical p...    27   4.4  
AL132860-23|CAC42381.1|   95|Caenorhabditis elegans Hypothetical...    26   5.8  
AL132860-22|CAB60520.1|  282|Caenorhabditis elegans Hypothetical...    26   5.8  
AC199169-7|ABO33257.1|  127|Caenorhabditis elegans Hypothetical ...    26   5.8  
U40956-4|AAA81759.1|  262|Caenorhabditis elegans Hypothetical pr...    26   7.7  
AF272397-1|AAF76229.1|  237|Caenorhabditis elegans CEH-17 protein.     26   7.7  
AF077544-5|AAK39240.1|  398|Caenorhabditis elegans Aspartyl prot...    26   7.7  
AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacti...    26   7.7  
AF003151-5|AAK18908.1|  237|Caenorhabditis elegans C.elegans hom...    26   7.7  

>AL110485-3|CAB60351.1| 2145|Caenorhabditis elegans Hypothetical
            protein Y46G5A.4 protein.
          Length = 2145

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = +2

Query: 176  IFSNWLEEKVELPI-FDNI--PERVEPTPQVVVAQPIPYSAPQTTEVLLREFETVY 334
            +   W+  +  LPI F ++  PE+  P  +++  QP+P SA     V  +EF+TV+
Sbjct: 1264 VSDRWIGAETVLPISFRHLILPEKYPPPTELLDLQPLPISA-----VTNKEFQTVF 1314


>AF099914-5|AAC68757.2|  218|Caenorhabditis elegans Hypothetical
           protein C40A11.6 protein.
          Length = 218

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -1

Query: 296 FEEQSMESVEL--QPLEVLAPHAPEYYQKLVVPPFPPANWRKYSLVCRCC 153
           F E++ E +E+  QP+    P   +   KL++ P P  ++R Y++   CC
Sbjct: 149 FIEKNREYLEIYFQPMNKREPWPIDLTNKLILTPEPLWSFRIYNITHPCC 198


>Z81522-4|CAB04233.1|  771|Caenorhabditis elegans Hypothetical
           protein F32B4.4a protein.
          Length = 771

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 191 LEEKVELPIFDNIPERVEPTPQVVVAQPIPYSAPQTT 301
           LE+ ++ PI    P+  EPTP+ +  Q +  S PQ T
Sbjct: 36  LEDPLDEPIEQKEPKAAEPTPKQL--QKVEASTPQAT 70


>Z70783-10|CAC70122.1| 1037|Caenorhabditis elegans Hypothetical
           protein ZK856.13 protein.
          Length = 1037

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/24 (41%), Positives = 19/24 (79%)
 Frame = -2

Query: 307 YFCSLRSRVWNRLSYNHLRCWLHT 236
           YFC++++R WN L++ ++R + HT
Sbjct: 802 YFCAIKARCWN-LAFEYVR-FFHT 823


>Z69361-3|CAA93289.1|  533|Caenorhabditis elegans Hypothetical
           protein T13H10.1 protein.
          Length = 533

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -1

Query: 281 MESVELQPLEVLAPHAPEYYQKLVVPPFPPANWRKYSLVCRCCLAAAED 135
           ME++E QP ++   +   Y  K V PPF P    K   + +    +AE+
Sbjct: 400 MENIE-QPKKIQVSNILPYMSKPVAPPFEPERQEKTQEMRKSMSNSAEE 447


>Z68882-20|CAA93112.1|  533|Caenorhabditis elegans Hypothetical
           protein T13H10.1 protein.
          Length = 533

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -1

Query: 281 MESVELQPLEVLAPHAPEYYQKLVVPPFPPANWRKYSLVCRCCLAAAED 135
           ME++E QP ++   +   Y  K V PPF P    K   + +    +AE+
Sbjct: 400 MENIE-QPKKIQVSNILPYMSKPVAPPFEPERQEKTQEMRKSMSNSAEE 447


>AL132860-23|CAC42381.1|   95|Caenorhabditis elegans Hypothetical
           protein Y56A3A.29b protein.
          Length = 95

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 221 DNIPERVEPTPQVVVAQPIPYSAPQTTEVLLREFET 328
           +NIPE+V    +    + +   AP+ TE+LL+   T
Sbjct: 27  ENIPEKVPAGNENQEVKKMKLQAPEPTEILLKSLLT 62


>AL132860-22|CAB60520.1|  282|Caenorhabditis elegans Hypothetical
           protein Y56A3A.29a protein.
          Length = 282

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 221 DNIPERVEPTPQVVVAQPIPYSAPQTTEVLLREFET 328
           +NIPE+V    +    + +   AP+ TE+LL+   T
Sbjct: 27  ENIPEKVPAGNENQEVKKMKLQAPEPTEILLKSLLT 62


>AC199169-7|ABO33257.1|  127|Caenorhabditis elegans Hypothetical
           protein F38A1.6 protein.
          Length = 127

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 275 SVELQPLEVLAPHAPEYYQKLVVPPFPPANW 183
           S+E+ P+ V  P A +YY  +VV    P N+
Sbjct: 24  SIEMAPMNV--PFAGQYYMNIVVQDHGPLNF 52


>U40956-4|AAA81759.1|  262|Caenorhabditis elegans Hypothetical
           protein ZK402.1 protein.
          Length = 262

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 191 LEEKVELPIFDNIPERVEPTPQVVVAQPIPYSAPQTTEVLLREFET 328
           +EE  +  I+ NIP +V+  P +   +P         +V +R+F T
Sbjct: 105 MEENNQPTIYGNIPRKVDKGPSIPRRKPKNSVFKNDKKVPMRDFTT 150


>AF272397-1|AAF76229.1|  237|Caenorhabditis elegans CEH-17 protein.
          Length = 237

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 235 ACGANTSSGCSSTDSILCSSNYRSTT 312
           A   ++SS  +ST S   SSNYR+TT
Sbjct: 60  AHNTSSSSAGNSTSSSSSSSNYRNTT 85


>AF077544-5|AAK39240.1|  398|Caenorhabditis elegans Aspartyl
           protease protein 3 protein.
          Length = 398

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 160 LQTREYFLQLAGGKGGTT 213
           LQ ++Y LQ++ G GG+T
Sbjct: 333 LQGKDYILQMSNGNGGST 350


>AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacting
           protein protein 6 protein.
          Length = 1106

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 224 NIPERVEPTPQVVVAQPIPYSAPQTT 301
           N PERV P     +    P+S+PQ T
Sbjct: 621 NDPERVSPPEDGEIVDTPPHSSPQAT 646


>AF003151-5|AAK18908.1|  237|Caenorhabditis elegans C.elegans
           homeobox protein 17 protein.
          Length = 237

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 235 ACGANTSSGCSSTDSILCSSNYRSTT 312
           A   ++SS  +ST S   SSNYR+TT
Sbjct: 60  AHNTSSSSAGNSTSSSSSSSNYRNTT 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,145,490
Number of Sequences: 27780
Number of extensions: 134064
Number of successful extensions: 536
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)