Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_J13
         (247 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   131   1e-32
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   131   1e-32
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    25   1.8  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    24   2.4  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    24   2.4  
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    23   4.3  
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    23   4.3  
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    23   4.3  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    23   5.6  
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    23   5.6  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    23   5.6  
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    23   5.6  
SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual      23   7.4  
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual       22   9.8  
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    22   9.8  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  131 bits (316), Expect = 1e-32
 Identities = 57/75 (76%), Positives = 67/75 (89%)
 Frame = +3

Query: 21  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 200
           MSH KF  PRHGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDL 60

Query: 201 DRPGSKINKKEIVEA 245
           DRPGSK++K+EI+EA
Sbjct: 61  DRPGSKMHKREILEA 75


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  131 bits (316), Expect = 1e-32
 Identities = 57/75 (76%), Positives = 67/75 (89%)
 Frame = +3

Query: 21  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 200
           MSH KF  PRHGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDL 60

Query: 201 DRPGSKINKKEIVEA 245
           DRPGSK++K+EI+EA
Sbjct: 61  DRPGSKMHKREILEA 75


>SPBC609.03 |||WD repeat protein, human IQWD1
          family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 7/21 (33%), Positives = 17/21 (80%)
 Frame = +2

Query: 23 VAQEVFGTSSWVDGILPQEEI 85
          ++++++G S+W+ GI  Q+E+
Sbjct: 21 ISRDIYGNSTWLTGIDLQKEL 41


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 93  HRGKVKAFPKDDPSKPVHLTAFIGYKAGMTH 185
           H   V++ PK+ P KPV  T    +  G  H
Sbjct: 294 HSANVQSRPKNYPQKPVQTTPEAVHANGSMH 324


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 12  SKSMSHRKFSAPRHGSMGFYPKKRSRRHRGKVK 110
           S S  +  FS PR  + GF  KK+ +  R + K
Sbjct: 671 SPSTVNSGFSTPRSQATGFSKKKKDKGERFETK 703


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 212 SRTVRFTNNVGHTSFVPNERSKVHGFARIIFR 117
           SRT   +  + H + VP +++  H F R+  R
Sbjct: 113 SRTPPSSCYIRHDTVVPKDKNGQHAFGRLYVR 144


>SPBC18H10.04c |sce3|tif48|translation initiation factor
          eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 8/30 (26%), Positives = 19/30 (63%)
 Frame = +2

Query: 8  AIEEYVAQEVFGTSSWVDGILPQEEIPSSP 97
          ++  ++  E FG+++W D I   +++P+ P
Sbjct: 10 SLNAFLGDESFGSTNWADDI---DDLPALP 36


>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 42  APRHGSMGFYPKKRSRR 92
           AP H  +GF+PK   R+
Sbjct: 110 APEHEKIGFFPKDIDRK 126


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +3

Query: 57  SMGFYPKKRSRRHRGKVKAFPKDDPSKPV 143
           +M FY + +     G    FP++   KP+
Sbjct: 199 AMAFYSQSKKYLEEGAKPPFPRESTEKPL 227


>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 105 VKAFPKDDPSKP 140
           +K FPKDD  KP
Sbjct: 218 IKFFPKDDKDKP 229


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -1

Query: 214 DPGRSGSRTTWVIPALYPMNAVRCTGLLGSS 122
           +P    SRT+W++P  +  +++   G   SS
Sbjct: 765 NPAFPQSRTSWMMPQSFDTSSLNAPGAKDSS 795


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +3

Query: 138 PVHLTAFIGYKAGMTHVVREP 200
           P+++ +F+ +K  +TH+V  P
Sbjct: 318 PIYVYSFVPHKIRLTHLVDAP 338


>SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 166 YPMNAVRCTGLLGSSLGKAFTLPR*RR 86
           Y   A+  TGL+ +S+G  F L R RR
Sbjct: 6   YKEKAIIGTGLITTSIGGFFFLRRFRR 32


>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 159 IGYKAGMTHVVRE-PDRPGSKINKKEIV 239
           I  K  +  +VR  P+RP S++NK +++
Sbjct: 84  IASKEFLNELVRRFPERPPSRLNKIQVM 111


>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 124 SLGKAFTLPR*RRDLFLG 71
           SL   FT+P  RR LF+G
Sbjct: 319 SLKVLFTVPSNRRSLFIG 336


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,098,842
Number of Sequences: 5004
Number of extensions: 19232
Number of successful extensions: 45
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 43306998
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)