Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_J13
(247 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 131 7e-32
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 130 2e-31
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 29 0.52
12_02_0232 - 16015174-16015244,16015861-16016671,16018412-16018861 27 2.8
09_02_0499 - 9917891-9918148,9918240-9918494,9918769-9918940,991... 26 4.9
01_03_0284 - 14595643-14595663,14595978-14596018,14596379-145967... 26 4.9
01_03_0179 + 13500413-13500768,13502522-13502642,13502876-135029... 26 4.9
08_02_1122 + 24468086-24468276,24468726-24468976,24469092-244691... 25 6.4
03_02_0701 - 10523053-10523220,10523802-10523916,10524102-105241... 25 6.4
02_04_0056 + 19313422-19313967,19314035-19314168,19314263-193143... 25 6.4
01_05_0660 - 24071523-24071780,24071873-24072127,24072209-240723... 25 6.4
10_01_0240 - 2506901-2507008,2507950-2508322,2508418-2508612,250... 25 8.5
07_01_0344 - 2490700-2493249 25 8.5
03_01_0469 - 3613062-3613745,3613952-3614512,3614600-3614690,361... 25 8.5
01_01_0548 - 4033077-4033349,4034007-4034261,4034362-4034533,403... 25 8.5
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 131 bits (317), Expect = 7e-32
Identities = 56/75 (74%), Positives = 66/75 (88%)
Frame = +3
Query: 21 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 200
MSHRKF PRHGS+GF P+KRS RHRGKVK+FPKDD SKP HLT+F+GYKAGMTH+VRE
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREV 60
Query: 201 DRPGSKINKKEIVEA 245
++PGSK++KKE EA
Sbjct: 61 EKPGSKLHKKETCEA 75
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 130 bits (314), Expect = 2e-31
Identities = 55/75 (73%), Positives = 66/75 (88%)
Frame = +3
Query: 21 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 200
MSHRKF PRHGS+GF P+KRS RHRGKVK+FPKDD +KP HLT+F+GYKAGMTH+VRE
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREV 60
Query: 201 DRPGSKINKKEIVEA 245
++PGSK++KKE EA
Sbjct: 61 EKPGSKLHKKETCEA 75
>07_03_0481 -
18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 29.1 bits (62), Expect = 0.52
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 12 SKSMSHRKFSAPRHGSM-GFYPKKRSRRHRGKVKAFPKDDPSKPVHLT 152
S S+ H + P+ S+ G P +++ + KVK K P VH+T
Sbjct: 237 STSLEHSESPPPKRKSLDGRTPASSTKKGKKKVKFVDKKHPENAVHIT 284
>12_02_0232 - 16015174-16015244,16015861-16016671,16018412-16018861
Length = 443
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -1
Query: 76 LG*NPIDP*RGAENFLCDI 20
LG P+ RGAE+FLCD+
Sbjct: 117 LGEPPLPTFRGAESFLCDV 135
>09_02_0499 -
9917891-9918148,9918240-9918494,9918769-9918940,
9919056-9919283,9919628-9919761,9919842-9919925,
9920007-9920297,9920569-9920901,9921029-9921171,
9921266-9921379,9921470-9921626,9921709-9921812,
9921914-9922074,9922158-9922474,9922574-9922855,
9923205-9923506,9923603-9923693,9923864-9923917,
9924052-9924128,9924213-9924372,9924473-9924557,
9924635-9924723,9925791-9925925
Length = 1341
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 184 WVIPALYPMNAVRCTGLLGSSLGKAFTLPR*RRDL 80
W+ P +Y NA+ LG S K T+P R L
Sbjct: 596 WISPLMYAQNAISVNEFLGHSWNK--TIPGFREPL 628
>01_03_0284 - 14595643-14595663,14595978-14596018,14596379-14596732,
14597023-14597494,14597524-14600001
Length = 1121
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 15 KSMSHRKFSAPRHGSMGF 68
K +SH + S PR GSMG+
Sbjct: 1089 KLLSHMRSSDPREGSMGY 1106
>01_03_0179 +
13500413-13500768,13502522-13502642,13502876-13502998,
13504409-13504497,13504612-13504696,13504852-13505011,
13505096-13505160,13505296-13505349,13505437-13505527,
13505685-13505986,13506084-13506365,13506451-13506764,
13506920-13507080,13507202-13507305,13507379-13507535,
13507652-13507896,13507995-13508327,13508428-13508751,
13508816-13508899,13509001-13509169,13509610-13509731,
13510538-13510792,13511115-13511252
Length = 1377
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -1
Query: 184 WVIPALYPMNAVRCTGLLGSSLGKAF 107
W+ P Y NA+ LG S K+F
Sbjct: 746 WISPLSYAQNAISTNEFLGRSWNKSF 771
>08_02_1122 +
24468086-24468276,24468726-24468976,24469092-24469182,
24469381-24469429,24469527-24469618,24469714-24469821,
24469912-24470046,24470153-24470563,24470664-24470805,
24470893-24470960,24471072-24471206,24471314-24471531,
24471634-24472004
Length = 753
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/51 (27%), Positives = 21/51 (41%)
Frame = +3
Query: 51 HGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 203
H + Y KRS R +P+D S +H+ A + Y +PD
Sbjct: 436 HNTDNLYSSKRSAVVRASDDFWPRDPASHTIHI-ASVAYNTVFLGEFMQPD 485
>03_02_0701 -
10523053-10523220,10523802-10523916,10524102-10524172,
10524263-10524420,10524497-10524590,10524678-10524766,
10525322-10525419,10525492-10525625,10525714-10525797,
10525903-10526151
Length = 419
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/31 (32%), Positives = 13/31 (41%)
Frame = -1
Query: 211 PGRSGSRTTWVIPALYPMNAVRCTGLLGSSL 119
P ++G W+ P P RC G G L
Sbjct: 76 PSKAGGIPAWLDPVNLPSGNSRCCGFCGEPL 106
>02_04_0056 +
19313422-19313967,19314035-19314168,19314263-19314398,
19314870-19314923,19314995-19315135,19315220-19315546,
19315647-19315916,19316080-19316226,19316890-19317045,
19317223-19317290,19318210-19318309,19318696-19318985,
19319074-19319274,19319840-19319902,19320263-19320356,
19320964-19321035,19321979-19322077,19322254-19322376
Length = 1006
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 9 LSKSMSHRKFSAPRHGSMGFYPKKRSR 89
+S S +FS PRHG +G P + +R
Sbjct: 166 VSCSSEIMRFSTPRHGEVGRIPNEWAR 192
>01_05_0660 -
24071523-24071780,24071873-24072127,24072209-24072380,
24072458-24072685,24072785-24072918,24073005-24073088,
24073231-24073521,24073599-24073931,24074016-24074266,
24074354-24074620,24074707-24074867,24074978-24075294,
24075386-24075667,24075753-24076054,24076147-24076237,
24076326-24076379,24076497-24076573,24076700-24076859,
24077129-24077213,24077421-24077630,24077736-24078097
Length = 1457
Score = 25.4 bits (53), Expect = 6.4
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -1
Query: 184 WVIPALYPMNAVRCTGLLGSSLGK 113
W+ P +Y NA+ L+G S K
Sbjct: 712 WISPMMYAQNAISVNELMGHSWNK 735
>10_01_0240 -
2506901-2507008,2507950-2508322,2508418-2508612,
2508771-2508885,2510027-2510132,2510253-2510366,
2510521-2510538
Length = 342
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +3
Query: 105 VKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKI 221
V F + D KP L A + G +H+V P PG +
Sbjct: 141 VVEFGESDDEKPEKLEALVAAVGGSSHIVHIP--PGEDL 177
>07_01_0344 - 2490700-2493249
Length = 849
Score = 25.0 bits (52), Expect = 8.5
Identities = 18/76 (23%), Positives = 34/76 (44%)
Frame = +3
Query: 15 KSMSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVR 194
K ++ S P G + ++ + + H+G +++ DD S+P + G V
Sbjct: 768 KCLADEGRSRPSIGEVLWHLESALQLHQGLLQSANTDDLSQPELKLSDASCNLGCIEEVE 827
Query: 195 EPDRPGSKINKKEIVE 242
E R GS+ +E V+
Sbjct: 828 ESCRAGSQDVNEEYVD 843
>03_01_0469 -
3613062-3613745,3613952-3614512,3614600-3614690,
3614782-3614870,3614962-3615027,3615309-3615423,
3615521-3615966
Length = 683
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 15 KSMSHRKFSAPRHGSMGFYP 74
KS +H++ PR+GSM + P
Sbjct: 86 KSCTHKRTILPRYGSMEYLP 105
>01_01_0548 -
4033077-4033349,4034007-4034261,4034362-4034533,
4034616-4034839,4035168-4035332,4035591-4035881,
4035971-4036303,4036391-4036485,4036570-4036689,
4036778-4036934,4037176-4037279,4037383-4037543,
4037636-4037952,4038655-4038936,4039020-4039321,
4039453-4039543,4040227-4040280,4040367-4040684,
4041008-4041092,4041178-4041266,4041474-4041594,
4042136-4042431
Length = 1434
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = -1
Query: 184 WVIPALYPMNAVRCTGLLGSSLGKAF 107
W+ P +Y NA+ LG S + F
Sbjct: 717 WISPMMYAQNAISVNEFLGHSWSQQF 742
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,421,076
Number of Sequences: 37544
Number of extensions: 142829
Number of successful extensions: 378
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 14,793,348
effective HSP length: 60
effective length of database: 12,540,708
effective search space used: 263354868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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