Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_J13
         (247 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69337-1|CAA93269.1|  401|Caenorhabditis elegans ribosomal prote...   142   4e-35
Z69336-1|CAA93268.1|  401|Caenorhabditis elegans ribosomal prote...   142   4e-35
Z66495-14|CAH04729.1|  353|Caenorhabditis elegans Hypothetical p...   142   4e-35
Z66495-12|CAA91277.1|  401|Caenorhabditis elegans Hypothetical p...   142   4e-35
Z49936-7|CAH10799.1|  353|Caenorhabditis elegans Hypothetical pr...   142   4e-35
Z49936-6|CAA90183.1|  401|Caenorhabditis elegans Hypothetical pr...   142   4e-35
Z66495-15|CAH04728.1|  303|Caenorhabditis elegans Hypothetical p...    64   2e-11
Z49936-8|CAH10798.1|  303|Caenorhabditis elegans Hypothetical pr...    64   2e-11
Z50874-3|CAA90773.1|  409|Caenorhabditis elegans Hypothetical pr...    26   4.1  
Z50874-2|CAA90772.1|  357|Caenorhabditis elegans Hypothetical pr...    26   4.1  
AL021171-3|CAB54258.1|  749|Caenorhabditis elegans Hypothetical ...    25   5.4  
AL021171-2|CAA15957.1|  747|Caenorhabditis elegans Hypothetical ...    25   5.4  
Z78200-4|CAB01582.1|  289|Caenorhabditis elegans Hypothetical pr...    25   7.1  
U32305-11|AAL50323.1|  663|Caenorhabditis elegans Splicing facto...    25   7.1  
U32305-10|AAM75378.1|  749|Caenorhabditis elegans Splicing facto...    25   7.1  
U32305-9|AAM75380.1|  751|Caenorhabditis elegans Splicing factor...    25   7.1  
U06932-1|AAA64937.1|  749|Caenorhabditis elegans CeSWAP protein.       25   7.1  
AC084153-2|AAK84597.1|  340|Caenorhabditis elegans Sphingomyelin...    25   7.1  
Z70312-7|CAH04716.1|  263|Caenorhabditis elegans Hypothetical pr...    25   9.4  
Z70311-13|CAA94375.2|  263|Caenorhabditis elegans Hypothetical p...    25   9.4  
Z70311-7|CAH04719.1|  154|Caenorhabditis elegans Hypothetical pr...    25   9.4  

>Z69337-1|CAA93269.1|  401|Caenorhabditis elegans ribosomal protein
           L3 protein.
          Length = 401

 Score =  142 bits (343), Expect = 4e-35
 Identities = 60/75 (80%), Positives = 70/75 (93%)
 Frame = +3

Query: 21  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 200
           MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60

Query: 201 DRPGSKINKKEIVEA 245
           D+PGSK+NKKE+VEA
Sbjct: 61  DKPGSKVNKKEVVEA 75


>Z69336-1|CAA93268.1|  401|Caenorhabditis elegans ribosomal protein
           L3 protein.
          Length = 401

 Score =  142 bits (343), Expect = 4e-35
 Identities = 60/75 (80%), Positives = 70/75 (93%)
 Frame = +3

Query: 21  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 200
           MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60

Query: 201 DRPGSKINKKEIVEA 245
           D+PGSK+NKKE+VEA
Sbjct: 61  DKPGSKVNKKEVVEA 75


>Z66495-14|CAH04729.1|  353|Caenorhabditis elegans Hypothetical
           protein F13B10.2c protein.
          Length = 353

 Score =  142 bits (343), Expect = 4e-35
 Identities = 60/75 (80%), Positives = 70/75 (93%)
 Frame = +3

Query: 21  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 200
           MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60

Query: 201 DRPGSKINKKEIVEA 245
           D+PGSK+NKKE+VEA
Sbjct: 61  DKPGSKVNKKEVVEA 75


>Z66495-12|CAA91277.1|  401|Caenorhabditis elegans Hypothetical
           protein F13B10.2a protein.
          Length = 401

 Score =  142 bits (343), Expect = 4e-35
 Identities = 60/75 (80%), Positives = 70/75 (93%)
 Frame = +3

Query: 21  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 200
           MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60

Query: 201 DRPGSKINKKEIVEA 245
           D+PGSK+NKKE+VEA
Sbjct: 61  DKPGSKVNKKEVVEA 75


>Z49936-7|CAH10799.1|  353|Caenorhabditis elegans Hypothetical
           protein F13B10.2c protein.
          Length = 353

 Score =  142 bits (343), Expect = 4e-35
 Identities = 60/75 (80%), Positives = 70/75 (93%)
 Frame = +3

Query: 21  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 200
           MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60

Query: 201 DRPGSKINKKEIVEA 245
           D+PGSK+NKKE+VEA
Sbjct: 61  DKPGSKVNKKEVVEA 75


>Z49936-6|CAA90183.1|  401|Caenorhabditis elegans Hypothetical
           protein F13B10.2a protein.
          Length = 401

 Score =  142 bits (343), Expect = 4e-35
 Identities = 60/75 (80%), Positives = 70/75 (93%)
 Frame = +3

Query: 21  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 200
           MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60

Query: 201 DRPGSKINKKEIVEA 245
           D+PGSK+NKKE+VEA
Sbjct: 61  DKPGSKVNKKEVVEA 75


>Z66495-15|CAH04728.1|  303|Caenorhabditis elegans Hypothetical
           protein F13B10.2d protein.
          Length = 303

 Score = 63.7 bits (148), Expect = 2e-11
 Identities = 27/34 (79%), Positives = 30/34 (88%)
 Frame = +3

Query: 21  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPK 122
           MSHRKFSAPRHG MGF PKKRSR +RG++KAF K
Sbjct: 1   MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34


>Z49936-8|CAH10798.1|  303|Caenorhabditis elegans Hypothetical
           protein F13B10.2d protein.
          Length = 303

 Score = 63.7 bits (148), Expect = 2e-11
 Identities = 27/34 (79%), Positives = 30/34 (88%)
 Frame = +3

Query: 21  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPK 122
           MSHRKFSAPRHG MGF PKKRSR +RG++KAF K
Sbjct: 1   MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34


>Z50874-3|CAA90773.1|  409|Caenorhabditis elegans Hypothetical
           protein R10E4.2b protein.
          Length = 409

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -2

Query: 72  GRIPSTHDEVPKTSCATYSSIAS 4
           G +P+T+D++ +  C+ Y +IAS
Sbjct: 113 GLMPNTNDDLLREMCSKYGNIAS 135


>Z50874-2|CAA90772.1|  357|Caenorhabditis elegans Hypothetical
           protein R10E4.2a protein.
          Length = 357

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -2

Query: 72  GRIPSTHDEVPKTSCATYSSIAS 4
           G +P+T+D++ +  C+ Y +IAS
Sbjct: 87  GLMPNTNDDLLREMCSKYGNIAS 109


>AL021171-3|CAB54258.1|  749|Caenorhabditis elegans Hypothetical
           protein H04D03.2b protein.
          Length = 749

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 36  FSAPRHGSMGFYPKKRSRRHRGKVKAF 116
           FSA RHG +  Y K R    + + K F
Sbjct: 601 FSAHRHGLLNIYRKPRENFEKNEKKKF 627


>AL021171-2|CAA15957.1|  747|Caenorhabditis elegans Hypothetical
           protein H04D03.2a protein.
          Length = 747

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 36  FSAPRHGSMGFYPKKRSRRHRGKVKAF 116
           FSA RHG +  Y K R    + + K F
Sbjct: 601 FSAHRHGLLNIYRKPRENFEKNEKKKF 627


>Z78200-4|CAB01582.1|  289|Caenorhabditis elegans Hypothetical
           protein T04H1.5 protein.
          Length = 289

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 78  KRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMT 182
           +R +  R +  A P    SK   L A +G+K GMT
Sbjct: 57  EREKERRDEALAKPISHESKGFALMAKMGFKPGMT 91


>U32305-11|AAL50323.1|  663|Caenorhabditis elegans Splicing factor
           (suppressor ofwhite apricot) related protein 1, isoform
           b protein.
          Length = 663

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 27  HRKFSAPRHGSMGFYPKKRSRRHRGKVKA 113
           HRK S  R  S    P+ RSR H+   K+
Sbjct: 607 HRKRSRSRRRSRSCSPRDRSREHKKSRKS 635


>U32305-10|AAM75378.1|  749|Caenorhabditis elegans Splicing factor
           (suppressor ofwhite apricot) related protein 1, isoform
           a protein.
          Length = 749

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 27  HRKFSAPRHGSMGFYPKKRSRRHRGKVKA 113
           HRK S  R  S    P+ RSR H+   K+
Sbjct: 693 HRKRSRSRRRSRSCSPRDRSREHKKSRKS 721


>U32305-9|AAM75380.1|  751|Caenorhabditis elegans Splicing factor
           (suppressor ofwhite apricot) related protein 1, isoform
           d protein.
          Length = 751

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 27  HRKFSAPRHGSMGFYPKKRSRRHRGKVKA 113
           HRK S  R  S    P+ RSR H+   K+
Sbjct: 695 HRKRSRSRRRSRSCSPRDRSREHKKSRKS 723


>U06932-1|AAA64937.1|  749|Caenorhabditis elegans CeSWAP protein.
          Length = 749

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 27  HRKFSAPRHGSMGFYPKKRSRRHRGKVKA 113
           HRK S  R  S    P+ RSR H+   K+
Sbjct: 693 HRKRSRSRRRSRSCSPRDRSREHKKSRKS 721


>AC084153-2|AAK84597.1|  340|Caenorhabditis elegans Sphingomyelin
           synthase protein 3 protein.
          Length = 340

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 87  GISSWGRIPSTHDEVPKTS 31
           G+S+W  +  THD VP+ S
Sbjct: 47  GMSNWAVLAYTHDYVPRES 65


>Z70312-7|CAH04716.1|  263|Caenorhabditis elegans Hypothetical
           protein T25B9.3a protein.
          Length = 263

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 102 KVKAFPKDDPSKPVHLTAFI 161
           K K  P+DDP K   + AFI
Sbjct: 118 KTKKTPRDDPKKIEQMVAFI 137


>Z70311-13|CAA94375.2|  263|Caenorhabditis elegans Hypothetical
           protein T25B9.3a protein.
          Length = 263

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 102 KVKAFPKDDPSKPVHLTAFI 161
           K K  P+DDP K   + AFI
Sbjct: 118 KTKKTPRDDPKKIEQMVAFI 137


>Z70311-7|CAH04719.1|  154|Caenorhabditis elegans Hypothetical
           protein T25B9.3b protein.
          Length = 154

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 102 KVKAFPKDDPSKPVHLTAFI 161
           K K  P+DDP K   + AFI
Sbjct: 9   KTKKTPRDDPKKIEQMVAFI 28


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,092,784
Number of Sequences: 27780
Number of extensions: 111402
Number of successful extensions: 244
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 12,740,198
effective HSP length: 61
effective length of database: 11,045,618
effective search space used: 220912360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)