Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_J12
         (291 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    29   0.14 
SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ...    27   0.42 
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    24   5.2  
SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase Le...    23   6.9  
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    23   6.9  
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc...    23   9.1  

>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 29.1 bits (62), Expect = 0.14
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +1

Query: 67  PYWADAGKPTLNGQSPDAPDAYPNCANGPYCAATAVQNYMNKFGLDCNGD 216
           P+ +D  K T      DA   YP+ ++ PYC +    ++ + F +D + D
Sbjct: 141 PFSSDTLKKTYLSSENDA--RYPSVSDSPYCESEGFSSFEDDFEIDPDTD 188


>SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 251

 Score = 27.5 bits (58), Expect = 0.42
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 223 VNCYDYMAIHKLGGYGCKATFP 288
           +N  DY+ ++  GGYGC   FP
Sbjct: 105 LNPSDYVIVYIPGGYGCSFDFP 126


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = +1

Query: 85  GKPTLNGQSPDAPDAY--PNCANGPY 156
           GKP+ + ++PDAP  Y  P C    Y
Sbjct: 11  GKPSRSTKNPDAPRPYKCPLCTKAFY 36


>SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase
           Leu1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 371

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 7   GCKQGTKCEGDACGLFHITWPY 72
           GC  G + E +  G    TWPY
Sbjct: 140 GCYFGERTEDNGSGYAMDTWPY 161


>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 81  ISPVRPCDMEQTASVAF 31
           + PVRP  +E+T  VAF
Sbjct: 80  LKPVRPFQLEKTVFVAF 96


>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +1

Query: 73  WADAGKPTLNGQSPDAPDAYPNCAN 147
           W +AG     G +PD    Y  CA+
Sbjct: 415 WREAGCSMCLGMNPDQLKPYERCAS 439


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,144,101
Number of Sequences: 5004
Number of extensions: 18819
Number of successful extensions: 38
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)