Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_J12
(291 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0250 + 2052599-2053358,2053581-2053604,2054813-2054848,205... 33 0.029
04_04_1396 + 33227126-33227846,33228530-33228637,33228825-33230029 30 0.27
03_02_0404 - 8165211-8165318,8165397-8165733,8166031-8166242,816... 29 0.63
03_01_0457 - 3506709-3506717,3507386-3507484,3507701-3508034,350... 29 0.83
01_01_0248 + 2041015-2041762,2042112-2042149 28 1.4
06_03_0535 + 21897912-21898064,21898151-21898246,21898362-218984... 27 1.9
08_02_1264 + 25706009-25706148,25706613-25706716,25707108-257072... 27 2.5
01_01_0235 - 1964981-1964997,1965545-1966325 27 2.5
09_02_0058 - 3704138-3704257,3704355-3704421,3704502-3704641,370... 27 3.3
09_01_0056 + 914117-914464 27 3.3
06_01_1013 - 7931756-7935109 27 3.3
12_02_1105 + 26128108-26129032,26129535-26129663,26129924-26131104 26 5.8
10_08_0351 - 17069974-17070232,17070470-17071751,17071908-170719... 26 5.8
09_04_0444 - 17649685-17650524 26 5.8
05_04_0127 - 18262499-18263104 26 5.8
02_01_0302 - 2021221-2023305 26 5.8
01_01_0239 + 1983267-1984008,1984148-1984180,1984280-1985394 26 5.8
01_01_0236 - 1967323-1967360,1967420-1968185,1969332-1969538 26 5.8
12_02_0657 - 21605598-21606199,21606524-21606641 25 7.7
10_08_0004 + 14022511-14022670,14022740-14023049,14023193-140234... 25 7.7
09_04_0656 + 19267392-19267432,19267530-19267637,19269114-192691... 25 7.7
03_06_0440 - 33954726-33954809,33955141-33955475,33955929-339561... 25 7.7
02_02_0088 - 6655493-6655601,6656057-6656259,6656382-6656594,665... 25 7.7
01_06_1325 + 36316307-36316527,36317074-36317126,36317451-36317791 25 7.7
01_06_0390 - 28938485-28938751,28939924-28941282 25 7.7
>01_01_0250 +
2052599-2053358,2053581-2053604,2054813-2054848,
2055047-2056284
Length = 685
Score = 33.5 bits (73), Expect = 0.029
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +1
Query: 22 TKCEGDACGLFHITWPYW-ADAGKPTLNGQSPDAPDAYP-NCANG 150
T C CG I +P+W D+ P + +P P A+ NC NG
Sbjct: 28 TSCAPRRCGNVTIAYPFWLPDSSPPPSSSSAPCGPAAFQVNCDNG 72
>04_04_1396 + 33227126-33227846,33228530-33228637,33228825-33230029
Length = 677
Score = 30.3 bits (65), Expect = 0.27
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 130 YPNCANGPYCAATAVQNYMNKFGLDCNG 213
Y N A+G CAAT + + N G C+G
Sbjct: 78 YGNIADGSSCAATCIDGWQNFAGPSCSG 105
>03_02_0404 -
8165211-8165318,8165397-8165733,8166031-8166242,
8166419-8166526,8166676-8166783,8166884-8166993,
8167122-8167228,8167349-8167566,8167674-8167841,
8168033-8168151,8168438-8168525,8168655-8168849,
8168968-8169271,8169363-8169480,8170034-8170133,
8170283-8170468
Length = 861
Score = 29.1 bits (62), Expect = 0.63
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +1
Query: 79 DAGKPTLNGQSPDAPDAYPNCANGPYC 159
D G P + Q DAPD N NG YC
Sbjct: 219 DTGVPWVMCQQSDAPDPLINTCNGFYC 245
>03_01_0457 -
3506709-3506717,3507386-3507484,3507701-3508034,
3508241-3508443,3508519-3508632,3508707-3508817,
3508907-3509016,3509132-3509241,3509450-3509628,
3509746-3509907,3509996-3510114,3510336-3510423,
3510520-3510625,3510769-3510857,3511211-3511354,
3511459-3511518,3511534-3511656,3511745-3511811,
3511941-3512053,3512140-3512235,3512651-3512818
Length = 867
Score = 28.7 bits (61), Expect = 0.83
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Frame = +1
Query: 31 EGDACGLFHITWP----YWADAGKPTLNGQSPDAPDAYPNCANGPYC 159
E A G +I W D G P + + DAPD N NG YC
Sbjct: 220 EFGAAGKAYINWAAKMAVGLDTGVPWVMCKEDDAPDPVINACNGFYC 266
>01_01_0248 + 2041015-2041762,2042112-2042149
Length = 261
Score = 27.9 bits (59), Expect = 1.4
Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 9/61 (14%)
Frame = +1
Query: 19 GTKCEGDACGLFHITWPYW------ADAGKPTLNGQSPDAP---DAYPNCANGPYCAATA 171
G C ACG I +P+W A G PT D P A P NG Y A
Sbjct: 23 GESCAPAACGGLTIKYPFWLRGRQPAYCGHPTFAVTCDDDPTGATATPPSLNGSYLRVLA 82
Query: 172 V 174
+
Sbjct: 83 I 83
>06_03_0535 +
21897912-21898064,21898151-21898246,21898362-21898474,
21898590-21898656,21898741-21898833,21898968-21899111,
21899693-21899781,21899910-21900015,21900119-21900206,
21900304-21900422,21900913-21901247,21901824-21901933,
21902070-21902179,21902303-21902413,21902870-21903174,
21903267-21903375
Length = 715
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 79 DAGKPTLNGQSPDAPDAYPNCANGPYC 159
+AG P + + DAPD N NG YC
Sbjct: 205 NAGVPWIMCKQDDAPDPVINTCNGFYC 231
>08_02_1264 +
25706009-25706148,25706613-25706716,25707108-25707284,
25707775-25709708,25709781-25709867,25710058-25710091,
25710293-25710381,25710522-25710674
Length = 905
Score = 27.1 bits (57), Expect = 2.5
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Frame = +1
Query: 16 QGTKCEGDACGLFH---ITWPYWADAGKPTLNGQSPDA 120
QGTKC +AC + + A AG LNGQ D+
Sbjct: 608 QGTKCVPEACSSGENSPVFYAARASAGNEPLNGQDTDS 645
>01_01_0235 - 1964981-1964997,1965545-1966325
Length = 265
Score = 27.1 bits (57), Expect = 2.5
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +1
Query: 25 KCEGDACGLFHITWPYWADAGKPTLNGQSPDAP-DAYPNCAN 147
+CE CG + +P+W G P N + +P A +C +
Sbjct: 24 ECEPATCGNLTVRYPFW--LGGPNFNQSNQSSPSSALASCGH 63
>09_02_0058 -
3704138-3704257,3704355-3704421,3704502-3704641,
3705332-3705424,3705927-3706109,3706491-3706595,
3706738-3706818,3706905-3707046,3707207-3707286,
3707456-3707568,3708051-3708297,3708659-3709051
Length = 587
Score = 26.6 bits (56), Expect = 3.3
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Frame = +1
Query: 40 ACGLFHITWPYWADAGKP---TLNGQ--SPDAPDAYPNCA-NGPYCAATAVQNYM 186
+CGLFHI +P D K T+ GQ D P A N AAT QNY+
Sbjct: 145 SCGLFHIAYPSAPDQLKAELRTIYGQLCQDDMPMVRRAAASNLGKFAATVEQNYL 199
>09_01_0056 + 914117-914464
Length = 115
Score = 26.6 bits (56), Expect = 3.3
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1
Query: 64 WPYWADAGKPTLN 102
WP W D+G PTL+
Sbjct: 16 WPLWLDSGPPTLD 28
>06_01_1013 - 7931756-7935109
Length = 1117
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 259 LTCGWPCNRSS*QRRHRCNPV 197
+TCG C+R RRHRC V
Sbjct: 311 VTCGQRCDRLLPCRRHRCEKV 331
>12_02_1105 + 26128108-26129032,26129535-26129663,26129924-26131104
Length = 744
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 148 GPYCAATAVQNYMNKFGLDCN 210
GP CAAT++ +Y F L CN
Sbjct: 53 GPSCAATSISSY---FNLTCN 70
>10_08_0351 -
17069974-17070232,17070470-17071751,17071908-17071969,
17072109-17072181,17072399-17072466,17073023-17073207,
17073311-17073452,17073665-17073720,17074003-17074056,
17074679-17074782,17075012-17075112,17075717-17075790,
17076482-17076560,17076668-17076744,17076875-17076931,
17077058-17077168,17077254-17077334
Length = 954
Score = 25.8 bits (54), Expect = 5.8
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
Frame = +1
Query: 160 AATAVQNYMNKFGLDCNGDGVV-------NCYDYMAIHKLGGY 267
A AV +YMN+F D +GDG++ YD +H + Y
Sbjct: 661 AVCAVMDYMNQF--DRDGDGLIENDGFPDQTYDAWTVHGISAY 701
>09_04_0444 - 17649685-17650524
Length = 279
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/53 (22%), Positives = 20/53 (37%)
Frame = +1
Query: 103 GQSPDAPDAYPNCANGPYCAATAVQNYMNKFGLDCNGDGVVNCYDYMAIHKLG 261
G +P P + GP C + + + G V C ++MA + G
Sbjct: 34 GMAPKPPGEIGSRVKGPSCGGGRYRECLKNHAVGIGGHAVDGCGEFMAAGEEG 86
>05_04_0127 - 18262499-18263104
Length = 201
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 160 AATAVQNYMNKFGLDCNGDGVVNCYDYMAIHKLG-GYG 270
AAT Q G+D NGDG++N ++ + G G+G
Sbjct: 160 AATVAQCRRMIDGVDRNGDGLINFEEFKLMMAAGAGFG 197
>02_01_0302 - 2021221-2023305
Length = 694
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +1
Query: 85 GKPTLNGQSPDAPDAYPNCANGPY 156
G P GQ P AP + P GPY
Sbjct: 391 GSPGRGGQGPPAPVSSPPRRRGPY 414
>01_01_0239 + 1983267-1984008,1984148-1984180,1984280-1985394
Length = 629
Score = 25.8 bits (54), Expect = 5.8
Identities = 18/82 (21%), Positives = 28/82 (34%)
Frame = +1
Query: 1 ARGCKQGTKCEGDACGLFHITWPYWADAGKPTLNGQSPDAPDAYPNCANGPYCAATAVQN 180
A G C CG IT+P+W + QS P ++ N +
Sbjct: 21 ANGATVDPSCPPATCGNLTITYPFWLGS-----QNQSSCGPPSFQLTCNDRASGPFLRNS 75
Query: 181 YMNKFGLDCNGDGVVNCYDYMA 246
Y+ G D +V + +A
Sbjct: 76 YIKVLGFDYGRRSLVAVHALLA 97
>01_01_0236 - 1967323-1967360,1967420-1968185,1969332-1969538
Length = 336
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/29 (34%), Positives = 13/29 (44%)
Frame = +1
Query: 19 GTKCEGDACGLFHITWPYWADAGKPTLNG 105
G C ACG I +P+W +P G
Sbjct: 95 GESCAPAACGNLTIKYPFWLRGRQPAYCG 123
>12_02_0657 - 21605598-21606199,21606524-21606641
Length = 239
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 93 RFASISPVRPCDMEQTASVAFTLSALLAASC 1
R IS +RPCD E++A A L +++ C
Sbjct: 97 RAQGISAIRPCDAEESA--AHALISVIKKEC 125
>10_08_0004 +
14022511-14022670,14022740-14023049,14023193-14023414,
14023497-14023721,14024045-14024119,14024619-14024754,
14025124-14025251,14025337-14025419,14025505-14025626,
14025732-14025810,14026252-14026420,14026562-14026622,
14026729-14026851,14027675-14027914,14028045-14028113,
14028353-14028429,14028527-14028593
Length = 781
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +1
Query: 13 KQGTK-CEGDACGLFHITWPYWADAGKPTLN 102
K G K C C L+ + P+ +A KP+LN
Sbjct: 276 KLGIKYCFNRPCALYAVPDPFMEEADKPSLN 306
>09_04_0656 +
19267392-19267432,19267530-19267637,19269114-19269195,
19269637-19269766,19269882-19270024,19270198-19270284,
19270384-19270458
Length = 221
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 196 GLDCNGDGVVNCYDYMAIHKLGGYGCKAT 282
GLD G G V YD + ++ GY + T
Sbjct: 116 GLDSEGKGCVFTYDAVGSYERTGYSAQGT 144
>03_06_0440 -
33954726-33954809,33955141-33955475,33955929-33956106,
33956205-33956285,33956629-33956740,33956831-33956931,
33957001-33957174,33957313-33957486,33957683-33957765,
33957852-33957912,33958069-33958251,33959630-33959848
Length = 594
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +1
Query: 97 LNGQSPDAPDAYPNCANGPYCAATAVQNYMNKFG 198
L G P D + A G CA VQ+ K+G
Sbjct: 110 LRGDPPHGQDKFVQVAGGFACALDLVQHIRAKYG 143
>02_02_0088 -
6655493-6655601,6656057-6656259,6656382-6656594,
6656683-6656792,6656878-6656981,6657076-6657245,
6657337-6657501,6657584-6657702,6657853-6657940,
6658035-6658140,6658235-6658323,6658461-6658604,
6658715-6658807,6658906-6658972,6659116-6659228,
6659306-6659401,6659524-6659724
Length = 729
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 79 DAGKPTLNGQSPDAPDAYPNCANGPYC 159
+ G P + + DAPD N NG YC
Sbjct: 221 NTGVPWVMCKQDDAPDPVINTCNGFYC 247
>01_06_1325 + 36316307-36316527,36317074-36317126,36317451-36317791
Length = 204
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 93 RFASISPVRPCDMEQTASVAFTLSALLAASC 1
R IS +RPCD E++A A L +++ C
Sbjct: 149 RAQGISAIRPCDAEESA--AHALISVIKKEC 177
>01_06_0390 - 28938485-28938751,28939924-28941282
Length = 541
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 151 PYCAATAVQNYMNKFGLDCNGDGVVN 228
P C ++ KFG CNG+ V+N
Sbjct: 401 PLCPVDCHRSDTVKFGCHCNGNRVIN 426
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,242,578
Number of Sequences: 37544
Number of extensions: 147748
Number of successful extensions: 421
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 316296968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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