Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_J12
         (291 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067611-3|AAC19179.1|  139|Caenorhabditis elegans Hypothetical ...    62   5e-11
U41547-6|AAA83197.1|  139|Caenorhabditis elegans Hypothetical pr...    57   2e-09
AF067611-4|AAC19181.1|  139|Caenorhabditis elegans Hypothetical ...    55   1e-08
AF067611-5|AAC19180.1|  145|Caenorhabditis elegans Hypothetical ...    46   5e-06
U58747-4|AAF99902.2|  159|Caenorhabditis elegans Hypothetical pr...    37   0.003
Z81493-1|CAB04039.1|  178|Caenorhabditis elegans Hypothetical pr...    28   0.97 
Z81545-7|CAB04437.1|   97|Caenorhabditis elegans Hypothetical pr...    26   3.9  
AF016429-6|AAX88813.1|  130|Caenorhabditis elegans Hypothetical ...    26   3.9  
AF016429-5|AAB65367.1|  305|Caenorhabditis elegans Hypothetical ...    26   3.9  
U70844-7|AAB09097.1|  686|Caenorhabditis elegans Adam (disintegr...    26   5.2  
AC024826-17|AAF60789.1|  662|Caenorhabditis elegans Hypothetical...    25   6.8  
Z81045-5|CAB02815.1|  322|Caenorhabditis elegans Hypothetical pr...    25   9.1  
Z30973-3|CAA83222.1|  420|Caenorhabditis elegans Hypothetical pr...    25   9.1  
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical...    25   9.1  
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ...    25   9.1  
AF067609-8|AAC17531.1|  111|Caenorhabditis elegans X-box promote...    25   9.1  

>AF067611-3|AAC19179.1|  139|Caenorhabditis elegans Hypothetical
           protein C45G7.3 protein.
          Length = 139

 Score = 62.5 bits (145), Expect = 5e-11
 Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
 Frame = +1

Query: 40  ACGLFHITWPYWADAGKPTL-NGQSPDAPDAYPNCANGPYCAATAVQNYMNKFGLDCNGD 216
           +CG + I  PY+ D G+PT  +G++ +A  A+  CAN   CA T V+NY N++   C G 
Sbjct: 44  SCGYYQIKLPYYEDCGQPTKKSGETTEA--AWKRCANDLSCATTCVENYYNRYKSQCAGT 101

Query: 217 GVVNCYDYMAIHKLGGYGCK 276
           G   C      H  G  GCK
Sbjct: 102 GQGACEVMARNHNGGPQGCK 121


>U41547-6|AAA83197.1|  139|Caenorhabditis elegans Hypothetical
           protein F22A3.6a protein.
          Length = 139

 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
 Frame = +1

Query: 40  ACGLFHITWPYWADAGKPTLN-GQSPDAPDAYPNCANGPYCAATAVQNYMNKFGLDCNGD 216
           +CG + I   Y+ D G+PT   G++ +A  A+  CA+   CA T V+NY N++   CNG 
Sbjct: 44  SCGYYQIKIGYYEDCGQPTKKAGETTEA--AWKRCADDLNCATTCVENYYNRYKSQCNGL 101

Query: 217 GVVNCYDYMAIHKLGGYGC 273
           G+  C      H  G  GC
Sbjct: 102 GMGACQIMSRNHNGGPRGC 120


>AF067611-4|AAC19181.1|  139|Caenorhabditis elegans Hypothetical
           protein C45G7.2 protein.
          Length = 139

 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
 Frame = +1

Query: 40  ACGLFHITWPYWADAGKP-TLNGQSPDAPDAYPNCANGPYCAATAVQNYMNKFGLDCNGD 216
           +CG + I  PY+ D G+P   +G+S +   A+  CA+   CA   V+NY N++  +C G 
Sbjct: 44  SCGYYQIKIPYYEDCGQPGKKHGESTEV--AWKRCADDLKCATNCVENYYNRYKHECAGT 101

Query: 217 GVVNCYDYMAIHKLGGYGCKAT 282
           G   C      H  G  GC A+
Sbjct: 102 GQGACEVMARNHNGGPRGCHAS 123


>AF067611-5|AAC19180.1|  145|Caenorhabditis elegans Hypothetical
           protein C45G7.1 protein.
          Length = 145

 Score = 46.0 bits (104), Expect = 5e-06
 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
 Frame = +1

Query: 46  GLFHITWPYWADAGKP-TLNGQSPDAPDAYPNCANGPYCAATAVQNYMNKFGLDCNGDGV 222
           G F I  PY+ D G+P    G+S ++  A+  CA+   CA T + NY +++   CNG G+
Sbjct: 28  GNFVIKLPYYIDCGEPGKQRGESTES--AWKRCADDLDCAETCMMNYYHRYKSQCNGLGM 85

Query: 223 VNC 231
             C
Sbjct: 86  SEC 88


>U58747-4|AAF99902.2|  159|Caenorhabditis elegans Hypothetical
           protein C55F2.2 protein.
          Length = 159

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 20/78 (25%), Positives = 33/78 (42%)
 Frame = +1

Query: 43  CGLFHITWPYWADAGKPTLNGQSPDAPDAYPNCANGPYCAATAVQNYMNKFGLDCNGDGV 222
           CG F +    +    +P    +  +  +A+ NCA    C+A+ ++    KF + C G   
Sbjct: 57  CGYFRLNIYQFQQCYQPGKKDEDTEN-EAWMNCAQDYQCSASCIRTLATKFRVKCYGKS- 114

Query: 223 VNCYDYMAIHKLGGYGCK 276
             C     IH  G  GC+
Sbjct: 115 -ECETIARIHDGGANGCR 131


>Z81493-1|CAB04039.1|  178|Caenorhabditis elegans Hypothetical
           protein F01D5.1 protein.
          Length = 178

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
 Frame = +1

Query: 103 GQSPDAPDAYPNCA-NGPYCAATAVQNYMNKFGLDCN 210
           G +   P   PNC  NGP CA      Y NK    C+
Sbjct: 106 GATTVMPTPNPNCQDNGPNCAGWVKNGYCNKCFYKCS 142


>Z81545-7|CAB04437.1|   97|Caenorhabditis elegans Hypothetical
           protein F49H6.8 protein.
          Length = 97

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 17/55 (30%), Positives = 20/55 (36%)
 Frame = +1

Query: 25  KCEGDACGLFHITWPYWADAGKPTLNGQSPDAPDAYPNCANGPYCAATAVQNYMN 189
           KCE  +  +     P      +P  N   P    A PN A GP    T V   MN
Sbjct: 47  KCENPSVNIATTEAPKIVTTAEPAANSTKP----AQPNSATGPVVLLTIVAVTMN 97


>AF016429-6|AAX88813.1|  130|Caenorhabditis elegans Hypothetical
           protein T21H3.1b protein.
          Length = 130

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +1

Query: 139 CANGPYCAATAVQNYMNKFGLDCNGDGVVNC 231
           C+NG     T+++++++ F +D +  G  NC
Sbjct: 95  CSNGQVLPDTSIKDHLHYFDVDVSDLGYSNC 125


>AF016429-5|AAB65367.1|  305|Caenorhabditis elegans Hypothetical
           protein T21H3.1a protein.
          Length = 305

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +1

Query: 139 CANGPYCAATAVQNYMNKFGLDCNGDGVVNC 231
           C+NG     T+++++++ F +D +  G  NC
Sbjct: 270 CSNGQVLPDTSIKDHLHYFDVDVSDLGYSNC 300


>U70844-7|AAB09097.1|  686|Caenorhabditis elegans Adam (disintegrin
           plus metalloprotease)family protein 4 protein.
          Length = 686

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +1

Query: 73  WADAGKPTLNGQSPDAPDAYPNCANG 150
           W     PT++   PD  +  PN  NG
Sbjct: 376 WGATHDPTIDSDDPDVEECSPNDQNG 401


>AC024826-17|AAF60789.1|  662|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.14 protein.
          Length = 662

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -2

Query: 104 PFN-VGLPASAQYGHVIWNKPQASPSH 27
           PF  V LP SA +G +  +KP A P H
Sbjct: 542 PFTPVELPNSADFGPLTASKPHAVPFH 568


>Z81045-5|CAB02815.1|  322|Caenorhabditis elegans Hypothetical
           protein C36F7.5 protein.
          Length = 322

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +1

Query: 76  ADAGKPTLNGQSPDAPDAYPNCANG-PYCAATAVQNYMNKFGLDCN 210
           +D G+ +    S DAP A P   N  P  AAT   NY    GL+ N
Sbjct: 50  SDKGESSPTPASKDAPPA-PAAPNAKPTMAATHDPNYQTLAGLNDN 94


>Z30973-3|CAA83222.1|  420|Caenorhabditis elegans Hypothetical
           protein B0284.4 protein.
          Length = 420

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 160 AATAVQNYMNKFGLDCNGDGVVNCYDY 240
           A T V+N +N+FG     +   NC  Y
Sbjct: 325 AITTVRNSLNQFGASLQENTFTNCIGY 351


>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
           protein Y64G10A.7 protein.
          Length = 1651

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +1

Query: 97  LNGQSPDAPDAYPNCANGPYCAATAVQNYMNKFGLDC 207
           +NG   D  D   +C  G Y A  +      +FG+DC
Sbjct: 863 VNGAKCDESDGSCHCTPGFYGATCSEVCPTGRFGIDC 899


>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
           protein Y64G10A.7 protein.
          Length = 1651

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +1

Query: 97  LNGQSPDAPDAYPNCANGPYCAATAVQNYMNKFGLDC 207
           +NG   D  D   +C  G Y A  +      +FG+DC
Sbjct: 863 VNGAKCDESDGSCHCTPGFYGATCSEVCPTGRFGIDC 899


>AF067609-8|AAC17531.1|  111|Caenorhabditis elegans X-box promoter
           element regulatedprotein 4 protein.
          Length = 111

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 58  ITWPYWADAGKPTLNGQSPDAPDA 129
           +TW   A + KPTL G+ P++  A
Sbjct: 2   LTWSTSATSSKPTLRGKIPNSKAA 25


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,594,001
Number of Sequences: 27780
Number of extensions: 119070
Number of successful extensions: 302
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 280685548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)