Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_J11
         (252 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.09c |mis13|cnl1|kinetochore protein Mis13|Schizosaccharo...    27   0.38 
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    24   3.5  
SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo...    24   3.5  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    24   3.5  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    23   4.7  
SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans...    23   6.2  
SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|c...    23   6.2  
SPCC18.15 |||WD repeat protein, human WRDR85 family|Schizosaccha...    23   8.2  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    23   8.2  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    23   8.2  

>SPBC409.09c |mis13|cnl1|kinetochore protein
           Mis13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 329

 Score = 27.1 bits (57), Expect = 0.38
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 146 AHRSRLLSKLKYFTTIQLINQLKTISFSAS 57
           AHR  LLS  KY  T+ L+  L   S+ +S
Sbjct: 295 AHRKSLLSFSKYVDTMNLLRLLSEASYKSS 324


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 161 FSLEAAHRSRLLSKLKYFTTIQLINQLKTISFSASHS 51
           FSL+    S+LLS+ K F T+  + Q+  +    + S
Sbjct: 151 FSLDNQTFSQLLSRFKSFATLTELLQVHNVMLQVNFS 187


>SPBC4C3.07 |||translation initiation factor
           eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 46  CNEWDAEKEIVFS*LINCIVVKYLSFESRRERCAASRLNYTP 171
           C E    ++I  S L + +VV YL+   R +   ASRLN  P
Sbjct: 261 CVEGQDFEKIFSSHLQDVLVVVYLANTLRTQVDIASRLNLLP 302


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +1

Query: 40  NVCNEWDAEKEIVFS*LINCIVVKYLSFESRRERCAASRLNYTPAVAPPRP 192
           N C   D +K  VFS +   I     +  + R   A  RL+ TP+  P  P
Sbjct: 375 NECASQD-KKNCVFSRVTKYIKAARRASTANRVSVAKDRLSLTPSSTPSTP 424


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 131 LLSKLKYFTTIQLINQLKTISFSASHSLHT 42
           +L  L YFT  + ++    +SF ++  LH+
Sbjct: 737 VLENLPYFTNSETVDLYNLLSFCSAFILHS 766


>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -2

Query: 251 IIYHRTRMIIIVSENDDVSKGRGGAT 174
           +I+HR     ++   D    GRGG +
Sbjct: 41  VIFHRVIPDFVIQGGDPTGTGRGGTS 66


>SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -1

Query: 75  YFFFCIPFITHVHHINTSSPS 13
           YFF+  P  TH  H  T   S
Sbjct: 227 YFFYLDPHCTHFAHTTTQPAS 247


>SPCC18.15 |||WD repeat protein, human WRDR85
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 177 HGRGVVQSRSRAPLAPTLET 118
           H  GVV   SRAP  P + T
Sbjct: 185 HHSGVVSILSRAPFGPYIAT 204


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = -1

Query: 75  YFFFCIPFITHVHHINTSSPSCR 7
           YF+ C  F+  VH ++     C+
Sbjct: 408 YFYPCFFFVVLVHRVSRDIKKCK 430


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 1    LNSARGR*CVYMMNVCNEWDAE 66
            LN++RG    Y+ N+ N W+ E
Sbjct: 1201 LNTSRGFETKYLYNLMNIWNPE 1222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 989,777
Number of Sequences: 5004
Number of extensions: 15168
Number of successful extensions: 35
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 47431474
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)