Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_J11
(252 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0203 - 14828009-14828110,14828171-14828269,14828375-148284... 29 0.39
05_04_0285 - 19825106-19826988,19828479-19828529,19830013-19830361 26 3.7
03_01_0296 + 2284385-2285629,2287632-2288594 26 3.7
12_01_0916 + 8959866-8959958,8960429-8960583,8960676-8961055,896... 25 6.4
09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,397... 25 6.4
07_03_0535 - 19198130-19198139,19199901-19199995,19200095-192001... 25 8.4
06_01_0945 - 7278911-7279417 25 8.4
03_01_0330 + 2566662-2566740,2566821-2566911,2567003-2567057,256... 25 8.4
>11_04_0203 -
14828009-14828110,14828171-14828269,14828375-14828461,
14828733-14829111,14829214-14829377,14829544-14829636,
14829843-14829989,14830065-14830166,14830392-14830490,
14830669-14830803,14830928-14831006,14831111-14831186,
14831281-14831370,14831723-14831798,14831880-14831914,
14832303-14832377,14832468-14832840
Length = 736
Score = 29.5 bits (63), Expect = 0.39
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Frame = -2
Query: 248 IYHRTRMIIIVSE--NDDVSKGRGGATAGV*FSLEAAHRSRLLSKLKYFTTIQLINQLKT 75
IYH+ R+I+ + SKGRG A ++ H + K + + +LIN+LK
Sbjct: 452 IYHKNRLILPFHRVLSSASSKGRGVAGVLEADFIKPTHDKQDFEKSQLYQ--KLINRLKE 509
Query: 74 ISFSASHSLHTFII*THHLPRA 9
++ + L++ ++ H LPRA
Sbjct: 510 MT-NEYWDLYSHLVGYHKLPRA 530
>05_04_0285 - 19825106-19826988,19828479-19828529,19830013-19830361
Length = 760
Score = 26.2 bits (55), Expect = 3.7
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 167 PLPWHPRVPYLHR 205
PLP HPR+P+L R
Sbjct: 60 PLPCHPRIPHLPR 72
>03_01_0296 + 2284385-2285629,2287632-2288594
Length = 735
Score = 26.2 bits (55), Expect = 3.7
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = -2
Query: 248 IYHRTRMIIIVSENDDVSKGRGGATAGV*FSLEAAHRSRLLSKLKYFTT-IQLINQLK 78
+YH R I+++++ D +G + V S+E A LLS K T ++L+ + K
Sbjct: 474 LYHMVRSFILLTDDKDYRIKKGKSLRPVPESVEKALCETLLSNRKQLTQGLRLLTRSK 531
>12_01_0916 +
8959866-8959958,8960429-8960583,8960676-8961055,
8961142-8962122,8962699-8962829
Length = 579
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -2
Query: 158 SLEAAHRSRLLSKLKYFTTIQLINQLKTISFSASHSLH 45
+L+ +S + LKY +T+Q++ Q + SH +H
Sbjct: 446 TLKHTFKSTKVKTLKYNSTVQMVLQNTRLVSKESHPMH 483
>09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,
3973665-3973982,3974565-3974763,3974937-3975202,
3975288-3975574,3976714-3977818,3977900-3978046,
3978146-3978226,3978315-3978540,3978622-3978761,
3979539-3979645,3979739-3979841
Length = 3638
Score = 25.4 bits (53), Expect = 6.4
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = -3
Query: 55 IHYTRSSYKHIISL 14
+H+TRS YKHI+ +
Sbjct: 3384 VHFTRSFYKHILGV 3397
>07_03_0535 -
19198130-19198139,19199901-19199995,19200095-19200154,
19200241-19200349,19200438-19200604,19200694-19200813,
19200901-19200987,19201068-19201196,19201284-19201362,
19201451-19201530,19201646-19201726,19201812-19201874,
19201963-19202139,19202381-19202476,19202610-19202729,
19202825-19202933,19203016-19203235,19203320-19203405,
19203491-19203552,19203649-19203685,19203790-19203848,
19203952-19204037,19204142-19204313
Length = 767
Score = 25.0 bits (52), Expect = 8.4
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -2
Query: 239 RTRMIIIVSENDDVSKGRGGATAG-V*FSLEAAHRSR 132
RTR I+ V KGRGG AG SL A + R
Sbjct: 274 RTRQILNVKTRTLPHKGRGGGLAGSTEMSLSAMRKHR 310
>06_01_0945 - 7278911-7279417
Length = 168
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 139 RCAASRLNYTPAVAPPRP 192
RC+A+ + +P APPRP
Sbjct: 6 RCSAATVAVSPRSAPPRP 23
>03_01_0330 +
2566662-2566740,2566821-2566911,2567003-2567057,
2567166-2567297,2567517-2567567,2567769-2567840,
2568590-2568680,2568988-2569066,2569147-2569210,
2569917-2570020,2570182-2570287,2572080-2572157,
2572649-2572801,2573039-2573128,2573284-2573349,
2573485-2573583,2573660-2573734,2574455-2574514,
2574909-2574998,2575202-2575323,2575462-2575591,
2575662-2575741,2576167-2576302,2577005-2577086,
2578475-2578620,2578796-2578876,2578994-2579094,
2579770-2580008,2580100-2580209,2580518-2580646,
2580728-2580802,2581455-2581586,2582298-2582470,
2582566-2582688,2582771-2582831,2582910-2583005,
2583251-2583351,2584014-2584119,2584673-2584786,
2584888-2584962,2585619-2585711,2585883-2585954,
2586253-2586338,2586434-2586527,2586596-2586703,
2586782-2587021
Length = 1579
Score = 25.0 bits (52), Expect = 8.4
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -2
Query: 140 RSRLLSKLKYF--TTIQLINQLKTISFSASHSLHTFI 36
RS+L S L T + L + + I+F ASHSLH +
Sbjct: 256 RSQLKSALPRIIPTMLDLCRKDQEIAFVASHSLHNLL 292
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,526,301
Number of Sequences: 37544
Number of extensions: 98054
Number of successful extensions: 300
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 14,793,348
effective HSP length: 62
effective length of database: 12,465,620
effective search space used: 261778020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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