Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_J11
         (252 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58752-3|AAB00666.1|  367|Caenorhabditis elegans Hypothetical pr...    27   1.3  
U41104-6|AAK77633.2|  419|Caenorhabditis elegans Hypothetical pr...    27   1.3  
Z68295-1|CAA92587.1|  325|Caenorhabditis elegans Hypothetical pr...    26   4.1  
AF045643-3|AAC02591.1|  272|Caenorhabditis elegans Hypothetical ...    26   4.1  
Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical p...    25   7.1  
Z69360-4|CAC42291.2|  732|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z69360-3|CAA93286.2|  369|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z69360-2|CAA93285.2|  780|Caenorhabditis elegans Hypothetical pr...    25   7.1  

>U58752-3|AAB00666.1|  367|Caenorhabditis elegans Hypothetical
           protein B0218.5 protein.
          Length = 367

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 134 ASGARLRD*TTPLPWHPRVPYL 199
           A+ ++++D T PL W P VPY+
Sbjct: 300 AAASKIKD-TDPLDWDPNVPYM 320


>U41104-6|AAK77633.2|  419|Caenorhabditis elegans Hypothetical
           protein T12C9.7 protein.
          Length = 419

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 40  NVCNEWDAEKEIVFS*LINCIVVKYLSFESRRERCAASRLNY 165
           NV +EWD E+E++ + +   +V    + +  RE C  SR NY
Sbjct: 360 NVKDEWDREREVMLTLIDLFLVAGDENHDIYREYC-TSRRNY 400


>Z68295-1|CAA92587.1|  325|Caenorhabditis elegans Hypothetical
           protein C07C7.1 protein.
          Length = 325

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 70  EIVFS*LINCIVVKYLSFESRRERCAASRLNYTPAVAPP 186
           ++ FS L  C++ +YL F   R+R  A  + +   + PP
Sbjct: 202 QMTFSDLFTCVISRYL-FSDSRQRIVAYIIIFLCFLTPP 239


>AF045643-3|AAC02591.1|  272|Caenorhabditis elegans Hypothetical
           protein F58H7.5 protein.
          Length = 272

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -2

Query: 215 SENDDVSKGRG--GATAGV*FSLEAAHRSRLLSKLKYFTTIQLINQL 81
           SE     +GR   G  A    S+EA H  R    +KY   +QL+ Q+
Sbjct: 21  SEGATAVRGRSSSGHVAAQESSIEAHHTPRNNLNIKYLALLQLVGQI 67


>Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical
           protein F26D2.10 protein.
          Length = 1213

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
 Frame = -2

Query: 215 SENDDVSKGRGGATAGV*FSLEAAHRSRLLSKLKYFTTIQLINQLKTIS----FSASHSL 48
           S NDDV+         + F L  + +S LLS++   +T  L+N+ K+I+    F++S SL
Sbjct: 110 SFNDDVN----AIFNNIIFILYFSRKSSLLSEVSSISTKNLLNETKSIAKDRLFNSSCSL 165

Query: 47  HT 42
            T
Sbjct: 166 LT 167


>Z69360-4|CAC42291.2|  732|Caenorhabditis elegans Hypothetical
           protein F25H8.5c protein.
          Length = 732

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +1

Query: 130 RRERCAASRLNYTPAVAPPR 189
           RRERC   R   TP   PPR
Sbjct: 79  RRERCRNRRPQPTPGPPPPR 98


>Z69360-3|CAA93286.2|  369|Caenorhabditis elegans Hypothetical
           protein F25H8.5b protein.
          Length = 369

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +1

Query: 130 RRERCAASRLNYTPAVAPPR 189
           RRERC   R   TP   PPR
Sbjct: 79  RRERCRNRRPQPTPGPPPPR 98


>Z69360-2|CAA93285.2|  780|Caenorhabditis elegans Hypothetical
           protein F25H8.5a protein.
          Length = 780

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +1

Query: 130 RRERCAASRLNYTPAVAPPR 189
           RRERC   R   TP   PPR
Sbjct: 79  RRERCRNRRPQPTPGPPPPR 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,559,156
Number of Sequences: 27780
Number of extensions: 86280
Number of successful extensions: 261
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 12,740,198
effective HSP length: 63
effective length of database: 10,990,058
effective search space used: 219801160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)