Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_J11
         (252 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   1.8  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   3.1  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    21   3.1  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    20   4.2  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    20   4.2  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    20   4.2  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    20   5.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    19   7.3  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             19   7.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             19   7.3  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    19   9.6  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    19   9.6  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    19   9.6  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    19   9.6  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 1.8
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -3

Query: 181  VPRQGCSSVSKPRTARAYSRNLNT 110
            +P  G  S+    +   Y RN+NT
Sbjct: 1204 IPSAGDISIESKSSPLVYKRNINT 1227


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 3.1
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = +1

Query: 28  VYMMNVCNEWDAEKEIVFS*LINCIVVKYLSFESRRERCA 147
           +YM   C E   +K +       C+V +Y     R+E  A
Sbjct: 233 MYMRRKCQECRLKKCLTVGMRPECVVPEYQCAVKRKEEKA 272


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 20.6 bits (41), Expect = 3.1
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +1

Query: 28  VYMMNVCNEWDAEKEIVFS*LINCIVVKYLSFESRRERCA 147
           +YM   C E   +K +       C+V +Y     R+E+ A
Sbjct: 30  MYMRRKCQECRLKKCLTVGMRPECMVPEYQCAVKRKEKKA 69


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 20.2 bits (40), Expect = 4.2
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 183 PASLTYIVIF 212
           P +LTY+VIF
Sbjct: 35  PITLTYVVIF 44


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 20.2 bits (40), Expect = 4.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 177 GTPASLTYIVIFAN 218
           G PA+LTYI +  N
Sbjct: 89  GIPATLTYISLDTN 102


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 20.2 bits (40), Expect = 4.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 185 GGATAGV*FSLEAAHRSRLLSKL 117
           GG   G+ FSL    R  +LS++
Sbjct: 267 GGGLVGLGFSLNGPDRIDILSQI 289


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 19.8 bits (39), Expect = 5.5
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -1

Query: 87  STKNYFFFCIPFITH 43
           + + Y   C PFI+H
Sbjct: 149 TVERYIAICHPFISH 163


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 19.4 bits (38), Expect = 7.3
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 196 VRDAGVPRQGCSSVSKPRTARAYSRNLNTSQ 104
           V D+G      +S S+  +  + SRN N S+
Sbjct: 12  VSDSGYSNTCSNSQSQRSSGSSISRNSNRSE 42


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 19.4 bits (38), Expect = 7.3
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 196 VRDAGVPRQGCSSVSKPRTARAYSRNLNTSQ 104
           V D+G      +S S+  +  + SRN N S+
Sbjct: 12  VSDSGYSNTCSNSQSQRSSGSSISRNSNRSE 42


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 19.4 bits (38), Expect = 7.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 192  GTRGCHGRGVVQSR 151
            G  GC   GVVQS+
Sbjct: 969  GMGGCQPGGVVQSQ 982


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 180 TPASLTYIVIFANNNNHSCSMIYD 251
           T A++ +    ANN  HS  +IY+
Sbjct: 19  TSAAVNHQRKSANNLAHSMKVIYE 42


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = -2

Query: 143 HRSRLLSKLKYFTTIQLINQLKTISFSASHSL 48
           H S   S   +   + LI    ++ +S++H+L
Sbjct: 471 HNSSPFSIYSFLERLNLIFMSSSLQWSSTHTL 502


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = -2

Query: 143 HRSRLLSKLKYFTTIQLINQLKTISFSASHSL 48
           H S   S   +   + LI    ++ +S++H+L
Sbjct: 509 HNSSPFSIYSFLERLNLIFMSSSLQWSSTHTL 540


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 7/25 (28%), Positives = 11/25 (44%)
 Frame = -2

Query: 80  KTISFSASHSLHTFII*THHLPRAE 6
           K   F    +LH  +   HH+ R +
Sbjct: 445 KKYPFELEKALHNVMFIQHHIQRQD 469


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,872
Number of Sequences: 438
Number of extensions: 1266
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4527252
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)