Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_J09
(191 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 30 0.049
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar... 27 0.45
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ... 24 2.4
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 3.2
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 23 4.2
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch... 23 4.2
SPAC8C9.05 |||D-Tyr-tRNA deacylase |Schizosaccharomyces pombe|ch... 23 7.4
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 23 7.4
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 23 7.4
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po... 22 9.8
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 22 9.8
SPAC31A2.03 |mrpl11||mitochondrial ribosomal protein subunit L11... 22 9.8
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 22 9.8
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 22 9.8
SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|c... 22 9.8
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 22 9.8
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 22 9.8
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 29.9 bits (64), Expect = 0.049
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = -1
Query: 185 CSMYYLEEKNNNKKPRRTASLNTELVFGRGPL*TET 78
C + YLE NN+ + R+TAS+ +F R P+ ++T
Sbjct: 483 CVVVYLE--NNDPEVRKTASITCSQLFARDPILSQT 516
>SPAC1093.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 26.6 bits (56), Expect = 0.45
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 34 PVHSSTGGVPYYTTNVSVYRGPLP 105
P+ S+T G+P YT+ V +RG +P
Sbjct: 271 PISSTTPGIPCYTSYVQ-HRGSIP 293
>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
Str2 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 597
Score = 24.2 bits (50), Expect = 2.4
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -2
Query: 64 REHHPLKSELGGAGPL 17
++ HPL+ EL AGP+
Sbjct: 23 QQFHPLREELDNAGPI 38
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 23.8 bits (49), Expect = 3.2
Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = -2
Query: 94 PYKRKRLL-CNREHHPLKSE 38
P++ K L CNR H PL S+
Sbjct: 231 PFRSKNSLRCNRGHSPLSSQ 250
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 23.4 bits (48), Expect = 4.2
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +2
Query: 89 IGAPFQIP--TQYSKRPCAAVFYCYFFLLNNTYY 184
+G QIP T + AAV +C+ +L+ YY
Sbjct: 689 LGGAAQIPSVTGINYSTWAAVAFCFNYLIRRGYY 722
>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
Atf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 23.4 bits (48), Expect = 4.2
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = +1
Query: 10 FTPTGRRPPVHSSTGG--VPYYTTNVSVY 90
FTP +PPV + T G Y+ N +V+
Sbjct: 248 FTPRDGKPPVVNGTNGDQSDYFGANAAVH 276
>SPAC8C9.05 |||D-Tyr-tRNA deacylase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 149
Score = 22.6 bits (46), Expect = 7.4
Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = -3
Query: 105 WKG--APINGNVCCVIGNTTR*RVNWGA 28
WK A I G + CV T RVN GA
Sbjct: 62 WKSTIADIQGEILCVSQFTLHARVNKGA 89
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 22.6 bits (46), Expect = 7.4
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -2
Query: 121 ILSWYLEGGPYKRKRLLCNREHHPL 47
++ W L+ PYK L E+ PL
Sbjct: 174 VIPWLLKDSPYKDAPPLDGTEYFPL 198
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 22.6 bits (46), Expect = 7.4
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +2
Query: 77 TFPFIGAPFQIPTQYSKR 130
+ P++ PFQIP+Q R
Sbjct: 223 SLPYLQQPFQIPSQRFSR 240
>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 674
Score = 22.2 bits (45), Expect = 9.8
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -2
Query: 94 PYKRKRLLCNREHH 53
PYK+K +L NR H
Sbjct: 40 PYKKKHVLVNRLKH 53
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 22.2 bits (45), Expect = 9.8
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = +1
Query: 37 VHSSTGGVPYYTTNVSVYRGPLPNTNSV 120
+H S+ + +N+ G PN NSV
Sbjct: 73 MHDSSSSLNTMESNIEKVNGLFPNDNSV 100
>SPAC31A2.03 |mrpl11||mitochondrial ribosomal protein subunit
L11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 22.2 bits (45), Expect = 9.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 191 IKCSMYYLEEKNNNKKPRRTASLNTEL 111
I+ S +L ++NN PR SL TEL
Sbjct: 32 IQESPNFLILQHNNLLPREAKSLRTEL 58
>SPAC12B10.03 |||WD repeat protein, human WDR20
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 22.2 bits (45), Expect = 9.8
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = -1
Query: 188 KCSMYYLEEKNNNKKP 141
K ++YY+ +NN KP
Sbjct: 449 KSAVYYVNHHSNNSKP 464
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 22.2 bits (45), Expect = 9.8
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = +2
Query: 95 APFQIPTQYSKRPCAAVF 148
+PF++ QY PC + F
Sbjct: 622 SPFRLVVQYRMHPCLSEF 639
>SPBC428.11 |||homocysteine synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 429
Score = 22.2 bits (45), Expect = 9.8
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +1
Query: 22 GRRPPVHSSTGGVPYYTTNVSVYR 93
G+ P +S+ VP Y T V+R
Sbjct: 16 GQEPDAATSSRAVPIYATTSYVFR 39
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 22.2 bits (45), Expect = 9.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 70 TTNVSVYRGPLPNTNS 117
TTN VYR PL + N+
Sbjct: 562 TTNEKVYRKPLSSQNT 577
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 22.2 bits (45), Expect = 9.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 112 NSVFKEAVRRGFLLLFFSSK*YILHF 189
+S+F E + L LFFS+ Y++ F
Sbjct: 1064 HSLFNEHFCKSNLQLFFSTDTYVIFF 1089
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 911,048
Number of Sequences: 5004
Number of extensions: 16016
Number of successful extensions: 43
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 42946120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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