Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_J09
(191 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0029 - 25194827-25195095,25195129-25197970 30 0.30
08_02_0514 + 18021365-18022527,18023489-18023660 27 1.6
07_01_1034 - 8962703-8962748,8962831-8962991,8963068-8963905,896... 27 2.8
12_01_0251 - 1858815-1860209 26 4.9
08_02_1149 + 24706429-24708105 26 4.9
03_06_0154 + 32029133-32029765 26 4.9
03_01_0652 + 4771551-4771821,4771931-4772038,4772744-4773024,477... 26 4.9
12_02_1124 + 26301884-26303725 25 6.4
07_01_0626 - 4681826-4682707 25 6.4
08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,535... 25 8.5
>02_05_0029 - 25194827-25195095,25195129-25197970
Length = 1036
Score = 29.9 bits (64), Expect = 0.30
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 19 TGRRPPVHSSTGGVPYYTTNVSVYRGPLPNTNS 117
+G P V S G + Y++ +++RGPLP++ S
Sbjct: 284 SGYLPNVFGSLGKLEYFSAQSNLFRGPLPSSLS 316
>08_02_0514 + 18021365-18022527,18023489-18023660
Length = 444
Score = 27.5 bits (58), Expect = 1.6
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 185 CSMYYLEEKNNNKKPRRTA--SLNTELVFGRGPL*TETF 75
C YY+++KN P+ SL E FG PL T+T+
Sbjct: 259 CLFYYIDKKNQQNPPQALLRFSLQDE-TFGVTPLLTDTY 296
>07_01_1034 -
8962703-8962748,8962831-8962991,8963068-8963905,
8963991-8964128,8964206-8964355,8964436-8964683,
8964825-8964953,8965735-8965960,8966909-8966975,
8967488-8967551,8968902-8969000,8969074-8969157,
8969240-8969321,8969412-8969460,8969664-8969769,
8970650-8970734,8970814-8970917,8970994-8971109,
8971187-8971373,8972005-8972113,8972633-8972761,
8973365-8973449,8973812-8973947,8974078-8974230,
8974488-8974634,8974801-8974941,8975580-8975903
Length = 1400
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = +2
Query: 74 QTFPFIGAPFQIPTQYSKRPCAAVFYCYFFLLNN 175
+T F G P I Q+ PC + C LL +
Sbjct: 445 RTIDFFGRPTHIIHQHENGPCGLIVICNVLLLRS 478
>12_01_0251 - 1858815-1860209
Length = 464
Score = 25.8 bits (54), Expect = 4.9
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 9 VHSNGPAPPSSLFNGWCSLLHNKRFRL*GPPSKYQLSI 122
VH G + P + W LLH R R GPP +L++
Sbjct: 98 VHVVGMSGPFTQPCQWIQLLHELRRRPEGPPRVVRLTV 135
>08_02_1149 + 24706429-24708105
Length = 558
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 104 QIPTQYSKRPCAAVFYCYFFLLNNTYY 184
Q+ Q S PCA+ + F +N+ YY
Sbjct: 312 QLGIQVSSLPCASALDVHGFAMNSAYY 338
>03_06_0154 + 32029133-32029765
Length = 210
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 47 QRVVFPITQQTFPFIGAPFQIPTQ 118
QRV TQ PF AP ++PTQ
Sbjct: 121 QRVPRDETQSNLPFRDAPVRLPTQ 144
>03_01_0652 +
4771551-4771821,4771931-4772038,4772744-4773024,
4773115-4773369,4773451-4773563,4773640-4773735,
4773844-4773997,4774380-4774697
Length = 531
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 185 CSMYYLEEKNNNKKPRRTASLNTELVF 105
CS Y++E N + ++T NTEL +
Sbjct: 311 CSQYFVEAYMNQPQVQKTIHANTELKY 337
>12_02_1124 + 26301884-26303725
Length = 613
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = +1
Query: 1 ARGFTPTGRRPPVHS--STGGVPYYTTNVSVYRGPLPN 108
A F P G +PPV S +G +P + V G P+
Sbjct: 131 AGNFAPVGEQPPVRSLPVSGRIPPFINGVYARNGANPH 168
>07_01_0626 - 4681826-4682707
Length = 293
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +1
Query: 19 TGRRPPVHSSTGGVPYYTTNVSVYRGPLP 105
TG PPV +P+Y +++ PLP
Sbjct: 216 TGSSPPVSPWRAAIPWYKAEMTLGYRPLP 244
>08_01_0609 +
5345761-5345862,5346808-5346871,5346958-5350191,
5350375-5350589,5351123-5351393,5351986-5352161,
5352287-5352394,5352821-5352930,5354291-5354393,
5354658-5354828,5354952-5355080,5355322-5355504,
5355612-5355701,5355823-5355934,5356100-5356227,
5357769-5357825,5357872-5357923,5358318-5358393,
5358860-5358950,5359046-5359224,5359563-5359681,
5359783-5359880
Length = 1955
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 152 NKKPRRTASLNTELVFGRG 96
N+K +RT SL+TE+ RG
Sbjct: 59 NRKAKRTISLHTEVASSRG 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,467,288
Number of Sequences: 37544
Number of extensions: 122836
Number of successful extensions: 345
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 14,793,348
effective HSP length: 43
effective length of database: 13,178,956
effective search space used: 263579120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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