Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_J09
(191 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical... 27 2.4
Z82278-9|CAE17877.1| 323|Caenorhabditis elegans Hypothetical pr... 26 4.3
Z82070-8|CAE17980.1| 323|Caenorhabditis elegans Hypothetical pr... 26 4.3
U40941-4|AAA81709.1| 771|Caenorhabditis elegans Hypothetical pr... 26 4.3
AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical ... 26 4.3
Z81083-3|CAB03104.1| 559|Caenorhabditis elegans Hypothetical pr... 25 7.4
U50308-6|AAG24025.2| 936|Caenorhabditis elegans Dispatched fami... 25 7.4
U39650-4|AAK39186.1| 944|Caenorhabditis elegans Apical junction... 25 7.4
U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction... 25 7.4
U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction... 25 7.4
U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction... 25 7.4
>AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical
protein Y59A8B.1a protein.
Length = 1641
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +1
Query: 25 RRPPVHSSTGGVPYYT-TNVSVYRGPLPN 108
+ PP S + G PYY N S Y P PN
Sbjct: 143 QHPPPPSMSNGAPYYPHMNPSPYYQPRPN 171
>Z82278-9|CAE17877.1| 323|Caenorhabditis elegans Hypothetical
protein W04E12.9 protein.
Length = 323
Score = 25.8 bits (54), Expect = 4.3
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +2
Query: 38 FTLQRVVFPITQQTFPFIGAPFQIPTQYSKRPCAAVFYCYFFLLNNTYY 184
FTL V ++Q+ F+ A ++ PCAA FY F TYY
Sbjct: 242 FTLPHFVTFASEQSQNFLLA-IKLSAILVGMPCAAFFYLKFDNFEATYY 289
>Z82070-8|CAE17980.1| 323|Caenorhabditis elegans Hypothetical
protein W04E12.9 protein.
Length = 323
Score = 25.8 bits (54), Expect = 4.3
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +2
Query: 38 FTLQRVVFPITQQTFPFIGAPFQIPTQYSKRPCAAVFYCYFFLLNNTYY 184
FTL V ++Q+ F+ A ++ PCAA FY F TYY
Sbjct: 242 FTLPHFVTFASEQSQNFLLA-IKLSAILVGMPCAAFFYLKFDNFEATYY 289
>U40941-4|AAA81709.1| 771|Caenorhabditis elegans Hypothetical
protein F35C8.7a protein.
Length = 771
Score = 25.8 bits (54), Expect = 4.3
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 110 PTQYSKRPCAAVFYCYFFLL 169
P Y+KR C VF C+ F +
Sbjct: 81 PQLYTKRGCTDVFCCFLFFV 100
>AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical
protein Y80D3A.8 protein.
Length = 1293
Score = 25.8 bits (54), Expect = 4.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 22 GRRPPVHSSTGGVPYYTTNVSVYRGPLPNTNSVF 123
G+R P+H++ P + V +GPL NT F
Sbjct: 1050 GQRVPIHANWVPTPGHPHRFIVTQGPLKNTRYDF 1083
>Z81083-3|CAB03104.1| 559|Caenorhabditis elegans Hypothetical
protein F44F1.4 protein.
Length = 559
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 37 VHSSTGGVPYYTTNVSVYRGPLPNTNSVF 123
V +TG Y T N ++Y G NTN V+
Sbjct: 249 VSKTTGS--YSTYNYTIYTGKFNNTNKVY 275
>U50308-6|AAG24025.2| 936|Caenorhabditis elegans Dispatched family
protein 2 protein.
Length = 936
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 121 ILSWYLEGGPYKRKRLLCN 65
IL WY E P +RKR + N
Sbjct: 84 ILRWYFEQDPGRRKRYIKN 102
>U39650-4|AAK39186.1| 944|Caenorhabditis elegans Apical junction
molecule protein1, isoform b protein.
Length = 944
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 69 VIGNTTR*RVNWGAPARWSEPS 4
V+GNTT AP W++PS
Sbjct: 40 VVGNTTTTTTTHYAPKTWNDPS 61
>U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction
molecule protein1, isoform c protein.
Length = 1148
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 69 VIGNTTR*RVNWGAPARWSEPS 4
V+GNTT AP W++PS
Sbjct: 40 VVGNTTTTTTTHYAPKTWNDPS 61
>U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction
molecule protein1, isoform d protein.
Length = 1439
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 69 VIGNTTR*RVNWGAPARWSEPS 4
V+GNTT AP W++PS
Sbjct: 40 VVGNTTTTTTTHYAPKTWNDPS 61
>U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction
molecule protein1, isoform a protein.
Length = 1480
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 69 VIGNTTR*RVNWGAPARWSEPS 4
V+GNTT AP W++PS
Sbjct: 40 VVGNTTTTTTTHYAPKTWNDPS 61
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,237,318
Number of Sequences: 27780
Number of extensions: 99658
Number of successful extensions: 278
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 12,740,198
effective HSP length: 43
effective length of database: 11,545,658
effective search space used: 230913160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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