Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_J07
         (158 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces...    23   4.1  
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch...    23   4.1  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    23   5.4  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    23   5.4  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    23   7.2  

>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -1

Query: 41  YRQIPDMSLVPN 6
           Y ++PD+SLVPN
Sbjct: 191 YTKLPDVSLVPN 202


>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 40  YCVAITILLLLYMVKI 87
           YCVAI I++ +Y V +
Sbjct: 445 YCVAIFIIIAIYAVNV 460


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 74   YNNNKIVIATQYRQIPDMSLVPN 6
            ++N   +++ QYR  PD+S  P+
Sbjct: 1434 FSNQMCLLSIQYRMHPDISHFPS 1456


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 18   AHVRYLTILCSYNNFIIIVHGKNNQ*MIKHINE 116
            A +  L ILC  ++F+  V G+N   +   I++
Sbjct: 1178 AKITQLDILCCMSDFVSRVEGENTSKIFTEISK 1210


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -1

Query: 110 YVLDHLLIIFTMYNNNKIVIATQYRQIPDM 21
           +VLD L  +  +Y NN I++    +++PD+
Sbjct: 297 HVLDALNGVLNVYTNNMILV--PIKEMPDL 324


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 537,718
Number of Sequences: 5004
Number of extensions: 6573
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 2,362,478
effective HSP length: 33
effective length of database: 2,197,346
effective search space used: 41749574
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)