Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_J07
         (158 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81564-9|CAB04575.1|  724|Caenorhabditis elegans Hypothetical pr...    25   5.5  
Z77652-12|CAI70406.1|  310|Caenorhabditis elegans Hypothetical p...    25   7.2  

>Z81564-9|CAB04575.1|  724|Caenorhabditis elegans Hypothetical
           protein K05C4.9 protein.
          Length = 724

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 116 FIYVLDHLLIIFTMYNNNKIVIATQYRQIPDMSLV 12
           FI+  DHL   FT Y  N I  A Q     D+S++
Sbjct: 422 FIHNFDHLGSNFTQYLRNSIWSAIQTLVTLDLSII 456


>Z77652-12|CAI70406.1|  310|Caenorhabditis elegans Hypothetical
           protein C06B3.14 protein.
          Length = 310

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 15  EAHVRYLTILCSYNNFIIIVH 77
           + + RYL ++C + NF +I H
Sbjct: 175 DEYARYLPVICLFLNFGVIYH 195


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,953,925
Number of Sequences: 27780
Number of extensions: 35729
Number of successful extensions: 46
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 12,740,198
effective HSP length: 33
effective length of database: 11,823,458
effective search space used: 224645702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)