Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_J06
         (214 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    23   5.5  
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch...    23   5.5  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    22   9.6  
SPAC222.11 |hem13||coproporphyrinogen III oxidase |Schizosacchar...    22   9.6  

>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 18/43 (41%), Positives = 21/43 (48%)
 Frame = -1

Query: 190 KSVKYFLSEALSNIKRLKYKKKI*VVGITQLPTDIIILFNEHR 62
           K VKY L E    +KRL  K+K       +L  D   L NEHR
Sbjct: 201 KKVKYLLDENGEILKRLVKKEK-------KLKNDNERLENEHR 236


>SPBC25H2.15 |||programmed cell death protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +3

Query: 66  CSLNRMIISVGNC 104
           CSLN  II  GNC
Sbjct: 42  CSLNPNIIKCGNC 54


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 114 TTQIFFLYFSLLIFESASLRKYLT 185
           +T    L+F LLIF   S   YLT
Sbjct: 507 STSTISLFFGLLIFTLKSAYGYLT 530


>SPAC222.11 |hem13||coproporphyrinogen III oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 312

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 81  MIISVGNCVIPTTQIFFLYFSLL 149
           M+I   N + PTT + + YF L+
Sbjct: 105 MVIHPRNPMAPTTHLNYRYFELV 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 758,791
Number of Sequences: 5004
Number of extensions: 10773
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 2,362,478
effective HSP length: 50
effective length of database: 2,112,278
effective search space used: 42245560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)