Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_J06
         (214 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0725 + 5305839-5306279,5306816-5307028,5307229-5307675,530...    27   2.7  
11_06_0551 + 24903208-24903399,24903513-24904661,24904686-24907502     25   6.3  
11_06_0541 + 24771145-24775479                                         25   6.3  
11_01_0774 - 6464482-6466684,6467214-6467920,6467928-6468152           25   8.3  
01_05_0495 + 22705697-22705765,22705903-22706025,22708429-227085...    25   8.3  

>06_01_0725 +
           5305839-5306279,5306816-5307028,5307229-5307675,
           5307768-5307917,5308185-5308486,5309718-5309758,
           5311294-5311968,5312343-5312386
          Length = 770

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 66  CSLNRMI-ISVGNCVIPTTQIFFLYFSLLIFESASL 170
           C+L+R++ + + NC I   +++ L     I+E A L
Sbjct: 283 CALSRLLYLRIANCEISKIEMYALKLKTFIYEGAQL 318


>11_06_0551 + 24903208-24903399,24903513-24904661,24904686-24907502
          Length = 1385

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -1

Query: 196 CVKSVKYFLSEALSNIKRLKYKKKI*VVGITQLPTDIIILFN 71
           C K  +++L +  SNI  LKY   +    IT+LP  I  L++
Sbjct: 808 CFKGKEHYLKDICSNILLLKY-LNLRGTDITKLPHQINNLYD 848


>11_06_0541 + 24771145-24775479
          Length = 1444

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -1

Query: 196 CVKSVKYFLSEALSNIKRLKYKKKI*VVGITQLPTDIIILFN 71
           C K  +++L +  SNI  LKY   +    IT+LP  I  L++
Sbjct: 866 CFKGKEHYLKDICSNILLLKY-LNLRGTDITKLPHQINNLYD 906


>11_01_0774 - 6464482-6466684,6467214-6467920,6467928-6468152
          Length = 1044

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -1

Query: 199 LCVKSVKYF--LSEALSNIKRLKYKKKI 122
           LC+ S K+   L EALSN+  L+Y K +
Sbjct: 820 LCLSSTKFTTGLLEALSNLSYLQYLKLV 847


>01_05_0495 + 22705697-22705765,22705903-22706025,22708429-22708586,
            22709162-22709206,22709367-22709445,22709522-22709595,
            22709703-22709809,22711116-22711301,22711882-22711920,
            22712020-22712086,22712207-22712281,22713113-22713347,
            22713425-22713755,22714530-22714710,22714810-22714950,
            22715041-22715302,22715503-22715892,22717179-22717735,
            22718421-22718557,22718672-22718853,22718959-22719339,
            22719420-22719545,22719635-22719700,22720056-22721839,
            22721914-22722193,22722386-22722616,22723067-22723588,
            22723683-22723815,22723937-22724193
          Length = 2405

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/18 (50%), Positives = 16/18 (88%)
 Frame = +2

Query: 23   RHEAIISINF*ALSMLIK 76
            +HE+++SI+F  L++LIK
Sbjct: 1770 KHESVLSISFRCLALLIK 1787


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,494,630
Number of Sequences: 37544
Number of extensions: 53950
Number of successful extensions: 76
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 14,793,348
effective HSP length: 50
effective length of database: 12,916,148
effective search space used: 258322960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)