Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_J06
         (214 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81570-1|CAB04606.1|  749|Caenorhabditis elegans Hypothetical pr...    27   2.4  
AY887910-1|AAX34422.1|  749|Caenorhabditis elegans anion transpo...    27   2.4  
AC024751-10|AAY55884.1|  654|Caenorhabditis elegans Hypothetical...    26   3.2  

>Z81570-1|CAB04606.1|  749|Caenorhabditis elegans Hypothetical
           protein K12G11.1 protein.
          Length = 749

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +3

Query: 66  CSLNRMIISVG-NCVIPTTQIFFLYFSLLIF 155
           CSL+R +++VG  C   TTQ+   + SL++F
Sbjct: 429 CSLSRTLVAVGAGC---TTQLSIFFSSLIVF 456


>AY887910-1|AAX34422.1|  749|Caenorhabditis elegans anion
           transporter SULP-4 protein.
          Length = 749

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +3

Query: 66  CSLNRMIISVG-NCVIPTTQIFFLYFSLLIF 155
           CSL+R +++VG  C   TTQ+   + SL++F
Sbjct: 429 CSLSRTLVAVGAGC---TTQLSIFFSSLIVF 456


>AC024751-10|AAY55884.1|  654|Caenorhabditis elegans Hypothetical
           protein Y18H1A.15 protein.
          Length = 654

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +3

Query: 60  YLCSLNRMIISVGNCVIPTTQIFFLYFSLLIFESASLRKYLTD 188
           +L ++ ++IISV  C+I    IF + + LL+FE   +  Y  D
Sbjct: 94  HLPTIRQIIISV-LCLITALLIFLVVWKLLLFEVIEVIVYWLD 135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,180,500
Number of Sequences: 27780
Number of extensions: 55848
Number of successful extensions: 103
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 12,740,198
effective HSP length: 50
effective length of database: 11,351,198
effective search space used: 227023960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)