Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_J06
         (214 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    20   3.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   3.8  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    20   3.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    19   8.9  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    19   8.9  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    19   8.9  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 19.8 bits (39), Expect = 3.8
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -1

Query: 202 LLCVKSVKYFLSEALSNIKRLKYKKK 125
           ++C     Y L +  +NI ++KY+ K
Sbjct: 14  IVCQAKAHYSLRDFKANIFQVKYQWK 39


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 19.8 bits (39), Expect = 3.8
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 90  SVGNCVIPTTQIFFLYFSLLIFESASLR 173
           S G+  +P+T++  +  S+  F   SLR
Sbjct: 816 SNGDIKVPSTKVLAMISSVKSFMELSLR 843


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 19.8 bits (39), Expect = 3.8
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -2

Query: 42  DIIASCRIQQPGGS 1
           +I A C    PGGS
Sbjct: 63  EIYAKCEFLNPGGS 76


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 18.6 bits (36), Expect = 8.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 214 SSG*LLCVKSVKY 176
           SSG + CV SVK+
Sbjct: 153 SSGSVSCVPSVKH 165


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 18.6 bits (36), Expect = 8.9
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -1

Query: 184 VKYFLSEALSNIKRLKYKK 128
           ++YF ++AL+   + KYK+
Sbjct: 81  IRYFPTQALNFAFKDKYKQ 99


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 18.6 bits (36), Expect = 8.9
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -1

Query: 184 VKYFLSEALSNIKRLKYKK 128
           ++YF ++AL+   + KYK+
Sbjct: 81  IRYFPTQALNFAFKDKYKQ 99


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,628
Number of Sequences: 438
Number of extensions: 755
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  3165825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)