Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_J05
         (181 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    27   0.43 
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch...    24   2.3  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    24   2.3  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      24   3.1  
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    23   4.0  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    23   5.3  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    23   7.1  

>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 26.6 bits (56), Expect = 0.43
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 2   ARIRHEDQLSNCAKYIXXXXXXVY 73
           A +RHE+ L NC  Y+      VY
Sbjct: 486 ATLRHENALQNCVGYLTLLIALVY 509


>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 563

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 180 SFTCVPVIIVIHGNSSIVQIVLHFYN 103
           +FT +P+I      S +  ++L+FYN
Sbjct: 183 AFTLLPIIAATIQLSDLPDVILNFYN 208


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +3

Query: 3    LEFGTRISCQIVLNIFFYFDFLFIHTNYRYLYFYCRSVKQFVQLSY 140
            L+ GT++S + V N+F           +  LY     +K   Q++Y
Sbjct: 990  LDDGTKLSDRSVYNLFGNMSLYCFFRLFHTLYSRLEEIKNLEQMAY 1035


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +3

Query: 42  NIFFYFDFLFIHTNYRYLYFYCR 110
           ++F +F FLF   ++ + +  CR
Sbjct: 115 SLFSFFSFLFTSLHFNFFFRLCR 137


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +3

Query: 69  FIHTNYRYLYFYCRSVKQFVQLSYYHG 149
           F+H+   +LY +    K+F   S++ G
Sbjct: 100 FVHSARVFLYHFLNEEKEFTLASFFWG 126


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = +3

Query: 30  QIVLNIFFYFD--FLFIHTNY 86
           +IV NIF+Y D  FL  H +Y
Sbjct: 119 EIVQNIFYYMDKTFLSHHPDY 139


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +3

Query: 60  DFL-FIHTNYRYLYFYCRSVKQFVQLSY 140
           DF+ FI   Y+Y  F+   VK    L+Y
Sbjct: 264 DFIEFIRNKYQYRNFFMAQVKTLSFLAY 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 662,448
Number of Sequences: 5004
Number of extensions: 9324
Number of successful extensions: 21
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 40
effective length of database: 2,162,318
effective search space used: 41084042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)