Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_J05
         (181 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0257 + 16170914-16171113,16171362-16171554,16171929-161720...    27   1.6  

>09_04_0257 +
           16170914-16171113,16171362-16171554,16171929-16172034,
           16172293-16172415,16172739-16172830,16173276-16173376,
           16173458-16173524,16174016-16174108,16174247-16174375
          Length = 367

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +3

Query: 3   LEFGTRISCQIVLNIFFYFDFLFIHTNYRYLY 98
           L  G+ ++C++VLN FF+  FLF  +N   LY
Sbjct: 41  LLLGSFMACRVVLNFFFF--FLFHLSNSLKLY 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,822,759
Number of Sequences: 37544
Number of extensions: 45968
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 14,793,348
effective HSP length: 39
effective length of database: 13,329,132
effective search space used: 266582640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)