Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_J05
         (181 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   1.4  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   1.8  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   1.8  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    20   3.1  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    19   4.1  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    19   7.2  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    19   7.2  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    19   7.2  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    18   9.6  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    18   9.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    18   9.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    18   9.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    18   9.6  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    18   9.6  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +1

Query: 148 DDDDYWN 168
           D DDYWN
Sbjct: 526 DSDDYWN 532


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 24  SCQIVLNIFFYFDFLFIHTNYRYLYFY 104
           SC I   +F  F FL   T  +  YF+
Sbjct: 15  SCVIFGVLFVLFSFLRTRTKLQPTYFH 41


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 24  SCQIVLNIFFYFDFLFIHTNYRYLYFY 104
           SC I   +F  F FL   T  +  YF+
Sbjct: 15  SCVIFGVLFVLFSFLRTRTKLQPTYFH 41


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = -1

Query: 163 SNHRHPW 143
           S+H HPW
Sbjct: 125 SSHEHPW 131


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -2

Query: 153 VIHGNSSIVQIVLHFYNKNINI 88
           V +    I ++  HFY+K + I
Sbjct: 141 VYYTMGQIREVARHFYHKELQI 162


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +3

Query: 15  TRISCQIVLNIFFYFDFLFIHTNY 86
           T I    V   FF F FL ++  Y
Sbjct: 355 TAIYIDKVSRFFFPFSFLILNVVY 378


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = +3

Query: 72  IHTNYRYLYFYCRSVKQ-FVQLSY 140
           IH N  Y Y Y  + K+ +  ++Y
Sbjct: 90  IHNNNNYKYNYNNNCKKLYYNINY 113


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 46  YFSILIFCLYILITDIYIFIVEV*NNLYN 132
           Y+  L   LYIL   +Y F   +   LYN
Sbjct: 301 YYPDLNEWLYILSGCLYYFSTTINPILYN 329


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 5/11 (45%), Positives = 5/11 (45%)
 Frame = -1

Query: 175 HLCSSNHRHPW 143
           HLC      PW
Sbjct: 46  HLCGKAFSRPW 56


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 21  ISCQIVLNIFFYFD 62
           +SCQ  LNIF + D
Sbjct: 184 LSCQGRLNIFPFDD 197


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 21  ISCQIVLNIFFYFD 62
           +SCQ  LNIF + D
Sbjct: 184 LSCQGRLNIFPFDD 197


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 21  ISCQIVLNIFFYFD 62
           +SCQ  LNIF + D
Sbjct: 235 LSCQGRLNIFPFDD 248


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 21  ISCQIVLNIFFYFD 62
           +SCQ  LNIF + D
Sbjct: 184 LSCQGRLNIFPFDD 197


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +1

Query: 124 LYN*AITMDDDDYWNT 171
           LYN    +D  DYW +
Sbjct: 183 LYNNKNFVDLSDYWKS 198


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,209
Number of Sequences: 438
Number of extensions: 646
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 39
effective length of database: 129,261
effective search space used:  2585220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)